miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 3' -60.1 NC_005261.1 + 118923 0.7 0.490813
Target:  5'- gGCGCCGcgggcgcgGCGCcGCGCGGcuGGCCGc- -3'
miRNA:   3'- -CGCGGCa-------CGCGaCGUGCCu-CUGGCac -5'
23656 3' -60.1 NC_005261.1 + 118202 0.75 0.246661
Target:  5'- cGCGCCugccGCGCUGCGCGGGGcGCUGa- -3'
miRNA:   3'- -CGCGGca--CGCGACGUGCCUC-UGGCac -5'
23656 3' -60.1 NC_005261.1 + 115361 0.69 0.538381
Target:  5'- aCGCUGUGCGCcucCACGGuuGCCGg- -3'
miRNA:   3'- cGCGGCACGCGac-GUGCCucUGGCac -5'
23656 3' -60.1 NC_005261.1 + 115206 0.67 0.637233
Target:  5'- aGCGcCCGUGCGUc-CGCGGcgcGAUCGUGu -3'
miRNA:   3'- -CGC-GGCACGCGacGUGCCu--CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 113545 0.68 0.587428
Target:  5'- gGgGCCGUGCGC-GCGCuG-GACCGc- -3'
miRNA:   3'- -CgCGGCACGCGaCGUGcCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 112821 0.74 0.29
Target:  5'- cGCGCUGacggGCuccaaccuCUGCACGGAGAUCGUGc -3'
miRNA:   3'- -CGCGGCa---CGc-------GACGUGCCUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 112680 0.66 0.696776
Target:  5'- aGCGCgagGgGCUGgGCGucGAGGCCGUGc -3'
miRNA:   3'- -CGCGgcaCgCGACgUGC--CUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 112220 0.76 0.235305
Target:  5'- cCGCagGUGaccaGCaGCACGGAGGCCGUGg -3'
miRNA:   3'- cGCGg-CACg---CGaCGUGCCUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 109918 0.68 0.617272
Target:  5'- cCGCCGggaUGCUGCACGuGuccgacgcGACCGUGa -3'
miRNA:   3'- cGCGGCac-GCGACGUGC-Cu-------CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 109230 0.68 0.587428
Target:  5'- aCGCCGcGCGCUGCagcGCGGcccAGugCGg- -3'
miRNA:   3'- cGCGGCaCGCGACG---UGCC---UCugGCac -5'
23656 3' -60.1 NC_005261.1 + 108419 0.66 0.745048
Target:  5'- cGCGCC-UGCG-UGCACGGcaACCGc- -3'
miRNA:   3'- -CGCGGcACGCgACGUGCCucUGGCac -5'
23656 3' -60.1 NC_005261.1 + 107677 0.66 0.744102
Target:  5'- cCGCCGgGCGUUGCcgccgcgGCGGGGgcGCCGc- -3'
miRNA:   3'- cGCGGCaCGCGACG-------UGCCUC--UGGCac -5'
23656 3' -60.1 NC_005261.1 + 106912 0.69 0.528729
Target:  5'- cGCGCCGcggcGCGCUGCAgGGccGCCa-- -3'
miRNA:   3'- -CGCGGCa---CGCGACGUgCCucUGGcac -5'
23656 3' -60.1 NC_005261.1 + 105285 0.68 0.587428
Target:  5'- aGCGCCGgcgagcccggGCGCgcgaGCGCGGGGuCCu-- -3'
miRNA:   3'- -CGCGGCa---------CGCGa---CGUGCCUCuGGcac -5'
23656 3' -60.1 NC_005261.1 + 104730 0.66 0.706567
Target:  5'- cGCGUCGUGcCGCgUGCGCGc--GCCGUu -3'
miRNA:   3'- -CGCGGCAC-GCG-ACGUGCcucUGGCAc -5'
23656 3' -60.1 NC_005261.1 + 104359 0.66 0.710467
Target:  5'- aGCGCCGccCGCgagaacagccgccgGC-CGGAGGCCGa- -3'
miRNA:   3'- -CGCGGCacGCGa-------------CGuGCCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 104266 0.66 0.695794
Target:  5'- aGCGCCGcggucucgGCgGCUGCGCGGgccucgcAGGCCc-- -3'
miRNA:   3'- -CGCGGCa-------CG-CGACGUGCC-------UCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 104163 0.66 0.725962
Target:  5'- cGCGCCGUccgcggGCGCcGCGCGcGGG-UCGUc -3'
miRNA:   3'- -CGCGGCA------CGCGaCGUGC-CUCuGGCAc -5'
23656 3' -60.1 NC_005261.1 + 102938 0.7 0.481529
Target:  5'- aGCGCCGccGcCGCUGCGgCGGcGGCCGc- -3'
miRNA:   3'- -CGCGGCa-C-GCGACGU-GCCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 100729 0.69 0.538381
Target:  5'- cGCGCCGcGCGCgcGCGCGGcGGCgCGc- -3'
miRNA:   3'- -CGCGGCaCGCGa-CGUGCCuCUG-GCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.