miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 3' -60.1 NC_005261.1 + 97646 0.67 0.686933
Target:  5'- gGCGCgG-GUGCcGCACcugGGGGGCCGg- -3'
miRNA:   3'- -CGCGgCaCGCGaCGUG---CCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 95787 0.72 0.377687
Target:  5'- uGCGCCGgcGCGCUGCuagccggcgccgGCGGGGGCuCGc- -3'
miRNA:   3'- -CGCGGCa-CGCGACG------------UGCCUCUG-GCac -5'
23656 3' -60.1 NC_005261.1 + 93934 0.66 0.735547
Target:  5'- uGCGCCGUccgcggGCGCcGCcuccggGCGGucGGCCGUc -3'
miRNA:   3'- -CGCGGCA------CGCGaCG------UGCCu-CUGGCAc -5'
23656 3' -60.1 NC_005261.1 + 93412 0.67 0.671098
Target:  5'- cCGUCGUGCGCccgcgccccgcgaugUGCuuGaGGGCCGUGg -3'
miRNA:   3'- cGCGGCACGCG---------------ACGugCcUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 92752 0.68 0.627251
Target:  5'- aGCGCCGcccGCGCcGCuCGGAccgGGCCGa- -3'
miRNA:   3'- -CGCGGCa--CGCGaCGuGCCU---CUGGCac -5'
23656 3' -60.1 NC_005261.1 + 92235 0.66 0.725962
Target:  5'- cCGCCGaGCGCgcGgAUGGAGGCCa-- -3'
miRNA:   3'- cGCGGCaCGCGa-CgUGCCUCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 91434 0.66 0.696776
Target:  5'- cCGCCGcggugaacGCGCUGCGCGGcacGGCCc-- -3'
miRNA:   3'- cGCGGCa-------CGCGACGUGCCu--CUGGcac -5'
23656 3' -60.1 NC_005261.1 + 90740 0.69 0.548093
Target:  5'- cGCGCCugagGCGCUgGCGCGGgacuuccccgAGGCCGc- -3'
miRNA:   3'- -CGCGGca--CGCGA-CGUGCC----------UCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 90547 0.67 0.686933
Target:  5'- cCGCCGccGCGCccga-GGAGGCCGUGc -3'
miRNA:   3'- cGCGGCa-CGCGacgugCCUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 90078 0.68 0.627251
Target:  5'- gGCGCCGaGgGCaGCgACGGGGGcCCGUu -3'
miRNA:   3'- -CGCGGCaCgCGaCG-UGCCUCU-GGCAc -5'
23656 3' -60.1 NC_005261.1 + 89404 0.66 0.706567
Target:  5'- cCGCCGgccuuccucgGCGCgUGCGCGGccGCCGg- -3'
miRNA:   3'- cGCGGCa---------CGCG-ACGUGCCucUGGCac -5'
23656 3' -60.1 NC_005261.1 + 86935 0.7 0.500179
Target:  5'- cCGCCGcGCGCggcggGCugGucaaAGACCGUGa -3'
miRNA:   3'- cGCGGCaCGCGa----CGugCc---UCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 86252 0.66 0.735547
Target:  5'- aGCGUCGUGUGCgcGCACGcGuG-CCGg- -3'
miRNA:   3'- -CGCGGCACGCGa-CGUGC-CuCuGGCac -5'
23656 3' -60.1 NC_005261.1 + 85789 0.66 0.706567
Target:  5'- aCGCCGU-CGCUGgGCaGAcGGCCGUc -3'
miRNA:   3'- cGCGGCAcGCGACgUGcCU-CUGGCAc -5'
23656 3' -60.1 NC_005261.1 + 84603 0.66 0.734593
Target:  5'- cGCGCCGU-UGCUGCcguugaugaucucGCGGAGcGCCu-- -3'
miRNA:   3'- -CGCGGCAcGCGACG-------------UGCCUC-UGGcac -5'
23656 3' -60.1 NC_005261.1 + 82956 0.72 0.399725
Target:  5'- gGCGCCGggcggaagacguggUGCGCgucgaGCACGGAGGCgGc- -3'
miRNA:   3'- -CGCGGC--------------ACGCGa----CGUGCCUCUGgCac -5'
23656 3' -60.1 NC_005261.1 + 82378 0.67 0.656182
Target:  5'- cGCGCCGccaGCGCcGCccagcccGCGG-GGCCGUc -3'
miRNA:   3'- -CGCGGCa--CGCGaCG-------UGCCuCUGGCAc -5'
23656 3' -60.1 NC_005261.1 + 82161 0.67 0.677047
Target:  5'- cGCGCCagcaaGCGCgGCGCGGaAGGCgCGg- -3'
miRNA:   3'- -CGCGGca---CGCGaCGUGCC-UCUG-GCac -5'
23656 3' -60.1 NC_005261.1 + 81372 0.66 0.706567
Target:  5'- gGCGCCG-G-GCUcGCugGGGGcGCCGg- -3'
miRNA:   3'- -CGCGGCaCgCGA-CGugCCUC-UGGCac -5'
23656 3' -60.1 NC_005261.1 + 80668 0.71 0.436468
Target:  5'- uCGCgGUGCGCgccGuCGCGGAGcCCGUa -3'
miRNA:   3'- cGCGgCACGCGa--C-GUGCCUCuGGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.