miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 3' -60.1 NC_005261.1 + 66299 0.66 0.745048
Target:  5'- uGCGUCaG-GCGCgGCACGGccaccgaggcGGCCGUGc -3'
miRNA:   3'- -CGCGG-CaCGCGaCGUGCCu---------CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 2548 0.73 0.339088
Target:  5'- aGCGCCGcgGCGCUGgGCGcGGGCgUGUGg -3'
miRNA:   3'- -CGCGGCa-CGCGACgUGCcUCUG-GCAC- -5'
23656 3' -60.1 NC_005261.1 + 57787 0.73 0.354177
Target:  5'- cGCGgCGUcGCGCggcggGCGCGcGAaGGCCGUGa -3'
miRNA:   3'- -CGCgGCA-CGCGa----CGUGC-CU-CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 135760 0.72 0.359569
Target:  5'- cGCGCgGUGCGCUccggcgcagaGCGCgugccgcugucggaGGuGACCGUGg -3'
miRNA:   3'- -CGCGgCACGCGA----------CGUG--------------CCuCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 31948 0.72 0.361898
Target:  5'- gGCGCCaacGUGCGCUaCACGGuGGCCa-- -3'
miRNA:   3'- -CGCGG---CACGCGAcGUGCCuCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 95787 0.72 0.377687
Target:  5'- uGCGCCGgcGCGCUGCuagccggcgccgGCGGGGGCuCGc- -3'
miRNA:   3'- -CGCGGCa-CGCGACG------------UGCCUCUG-GCac -5'
23656 3' -60.1 NC_005261.1 + 33605 0.72 0.385753
Target:  5'- gGCGCCG-GCGCggGCgGCGGGGcCCGg- -3'
miRNA:   3'- -CGCGGCaCGCGa-CG-UGCCUCuGGCac -5'
23656 3' -60.1 NC_005261.1 + 37239 0.72 0.393933
Target:  5'- gGCGCgGcGCGUggacaGCGCGGAGACCa-- -3'
miRNA:   3'- -CGCGgCaCGCGa----CGUGCCUCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 82956 0.72 0.399725
Target:  5'- gGCGCCGggcggaagacguggUGCGCgucgaGCACGGAGGCgGc- -3'
miRNA:   3'- -CGCGGC--------------ACGCGa----CGUGCCUCUGgCac -5'
23656 3' -60.1 NC_005261.1 + 35305 0.73 0.339088
Target:  5'- aGCGCCGggccGgGCUGCucGgGGAGGCCGg- -3'
miRNA:   3'- -CGCGGCa---CgCGACG--UgCCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 33702 0.73 0.33172
Target:  5'- cGCGCgGggccCGCUGCACGaGGGGCgGUGg -3'
miRNA:   3'- -CGCGgCac--GCGACGUGC-CUCUGgCAC- -5'
23656 3' -60.1 NC_005261.1 + 76860 0.73 0.317339
Target:  5'- cGCGCCGccugGCGCccgGCGaGGAGGCCGa- -3'
miRNA:   3'- -CGCGGCa---CGCGa--CGUgCCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 68879 0.86 0.049962
Target:  5'- uGCGCCGUcguGCGCUGCGCGGAcGCCGUc -3'
miRNA:   3'- -CGCGGCA---CGCGACGUGCCUcUGGCAc -5'
23656 3' -60.1 NC_005261.1 + 61121 0.8 0.117937
Target:  5'- uGCGCCGUGCGCUGCuucGCGcaagucauGGCCGUGc -3'
miRNA:   3'- -CGCGGCACGCGACG---UGCcu------CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 119561 0.78 0.155609
Target:  5'- gGgGCCGcaaguggaUGCGCUGCgaGCGcGAGACCGUGg -3'
miRNA:   3'- -CgCGGC--------ACGCGACG--UGC-CUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 112220 0.76 0.235305
Target:  5'- cCGCagGUGaccaGCaGCACGGAGGCCGUGg -3'
miRNA:   3'- cGCGg-CACg---CGaCGUGCCUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 118202 0.75 0.246661
Target:  5'- cGCGCCugccGCGCUGCGCGGGGcGCUGa- -3'
miRNA:   3'- -CGCGGca--CGCGACGUGCCUC-UGGCac -5'
23656 3' -60.1 NC_005261.1 + 77074 0.75 0.257867
Target:  5'- gGUGCCGcgcgagGCGCUgGCGCGGAcgcugcucucgacGGCCGUGa -3'
miRNA:   3'- -CGCGGCa-----CGCGA-CGUGCCU-------------CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 112821 0.74 0.29
Target:  5'- cGCGCUGacggGCuccaaccuCUGCACGGAGAUCGUGc -3'
miRNA:   3'- -CGCGGCa---CGc-------GACGUGCCUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 69423 0.74 0.310326
Target:  5'- cGCGCCG-GCGCauCACGGAGACgGg- -3'
miRNA:   3'- -CGCGGCaCGCGacGUGCCUCUGgCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.