Results 81 - 100 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23656 | 3' | -60.1 | NC_005261.1 | + | 106912 | 0.69 | 0.528729 |
Target: 5'- cGCGCCGcggcGCGCUGCAgGGccGCCa-- -3' miRNA: 3'- -CGCGGCa---CGCGACGUgCCucUGGcac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 29848 | 0.69 | 0.528729 |
Target: 5'- cGCGCCGUGCucgccgGCcGCGCGGc-GCCGg- -3' miRNA: 3'- -CGCGGCACG------CGaCGUGCCucUGGCac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 54053 | 0.69 | 0.528729 |
Target: 5'- cGCGCgGUGCGCUucgguaGUGCGGucgaAGGCCGc- -3' miRNA: 3'- -CGCGgCACGCGA------CGUGCC----UCUGGCac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 33028 | 0.69 | 0.538381 |
Target: 5'- gGCGCCGaUGCGgaGCguccGCGGAGgGCCa-- -3' miRNA: 3'- -CGCGGC-ACGCgaCG----UGCCUC-UGGcac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 47674 | 0.69 | 0.538381 |
Target: 5'- aGCGCCGaGCGCaGCACGGccGCCc-- -3' miRNA: 3'- -CGCGGCaCGCGaCGUGCCucUGGcac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 115361 | 0.69 | 0.538381 |
Target: 5'- aCGCUGUGCGCcucCACGGuuGCCGg- -3' miRNA: 3'- cGCGGCACGCGac-GUGCCucUGGCac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 30165 | 0.69 | 0.538381 |
Target: 5'- gGCGCCGcgcccgccGCGCUGCGCGccGAGGCgGc- -3' miRNA: 3'- -CGCGGCa-------CGCGACGUGC--CUCUGgCac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 59416 | 0.7 | 0.500179 |
Target: 5'- gGCGCCG-GCGCUGuCGCGcGGcCCGg- -3' miRNA: 3'- -CGCGGCaCGCGAC-GUGCcUCuGGCac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 47453 | 0.7 | 0.500179 |
Target: 5'- gGCGcCCGgccCGCuUGCGCGGGGGCUGg- -3' miRNA: 3'- -CGC-GGCac-GCG-ACGUGCCUCUGGCac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 73726 | 0.7 | 0.500179 |
Target: 5'- uCGgCGUGCGCgcuugcGCGCGGGGGuCCGg- -3' miRNA: 3'- cGCgGCACGCGa-----CGUGCCUCU-GGCac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 132081 | 0.71 | 0.454208 |
Target: 5'- cCGCCGUcGcCGCUGcCGCGGAGGgCGg- -3' miRNA: 3'- cGCGGCA-C-GCGAC-GUGCCUCUgGCac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 75472 | 0.7 | 0.458704 |
Target: 5'- gGCGCCGggcggcgGCGCgggccgcuacgaGCGCGGGGcgcuggaggcgcacGCCGUGg -3' miRNA: 3'- -CGCGGCa------CGCGa-----------CGUGCCUC--------------UGGCAC- -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 53108 | 0.7 | 0.463223 |
Target: 5'- aGCGCCGcgGCGCUGCGCGcc-GCCa-- -3' miRNA: 3'- -CGCGGCa-CGCGACGUGCcucUGGcac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 77664 | 0.7 | 0.463223 |
Target: 5'- gGCGCCugcagGCGCaggGCGCGGAcgGGCCGg- -3' miRNA: 3'- -CGCGGca---CGCGa--CGUGCCU--CUGGCac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 68757 | 0.7 | 0.463223 |
Target: 5'- cCGCCGggGCGC--CGCGGAGccGCCGUGu -3' miRNA: 3'- cGCGGCa-CGCGacGUGCCUC--UGGCAC- -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 63551 | 0.7 | 0.472332 |
Target: 5'- cGCGCCGUGCccGCUgGCGCGGccggcaugauGGGCCc-- -3' miRNA: 3'- -CGCGGCACG--CGA-CGUGCC----------UCUGGcac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 102938 | 0.7 | 0.481529 |
Target: 5'- aGCGCCGccGcCGCUGCGgCGGcGGCCGc- -3' miRNA: 3'- -CGCGGCa-C-GCGACGU-GCCuCUGGCac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 118923 | 0.7 | 0.490813 |
Target: 5'- gGCGCCGcgggcgcgGCGCcGCGCGGcuGGCCGc- -3' miRNA: 3'- -CGCGGCa-------CGCGaCGUGCCu-CUGGCac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 76166 | 0.7 | 0.499239 |
Target: 5'- aCGCCGUgGCGCUGCaguacgaGCGGGGcCUGg- -3' miRNA: 3'- cGCGGCA-CGCGACG-------UGCCUCuGGCac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 71959 | 0.7 | 0.500179 |
Target: 5'- gGCGUCG-GCGCgggGCGCGGAGcGCgCGg- -3' miRNA: 3'- -CGCGGCaCGCGa--CGUGCCUC-UG-GCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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