miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 73779 0.66 0.985968
Target:  5'- cGCuGGCCugCGaCgUGcGCGCGGCGg -3'
miRNA:   3'- aCGuUCGGugGUaGgAUuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 62042 0.66 0.985968
Target:  5'- cGCGgcucGGCCGgC-UCC-AGGCGCAGCa -3'
miRNA:   3'- aCGU----UCGGUgGuAGGaUUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 107450 0.66 0.985968
Target:  5'- cGUuGGCCACCG-CCccGGCACcGCa -3'
miRNA:   3'- aCGuUCGGUGGUaGGauUCGUGuUGc -5'
23656 5' -51.3 NC_005261.1 + 118557 0.66 0.985968
Target:  5'- cGCGAGgaCGCCGUgcCCgcgcGCGCGGCGg -3'
miRNA:   3'- aCGUUCg-GUGGUA--GGauu-CGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 71058 0.66 0.985968
Target:  5'- cGUggGCCAgCcgCC---GCGCGGCGg -3'
miRNA:   3'- aCGuuCGGUgGuaGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 16687 0.66 0.985968
Target:  5'- gUGUAGGCgACCGcgCCgucgauGUACAGCGc -3'
miRNA:   3'- -ACGUUCGgUGGUa-GGauu---CGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 131819 0.66 0.985968
Target:  5'- gGCGcGCCGCCG-CUUGA-CGCGGCGc -3'
miRNA:   3'- aCGUuCGGUGGUaGGAUUcGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 29232 0.66 0.985968
Target:  5'- cGCAGGCUACg--CCgcggcgccGCGCGACGg -3'
miRNA:   3'- aCGUUCGGUGguaGGauu-----CGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 19541 0.66 0.985968
Target:  5'- cGCGucaCCGCCAgcgCCgugggGAGCGcCAGCGg -3'
miRNA:   3'- aCGUuc-GGUGGUa--GGa----UUCGU-GUUGC- -5'
23656 5' -51.3 NC_005261.1 + 45946 0.66 0.985968
Target:  5'- cGCGagGGCCGCCAgggcgCCguUGAGCAUGcGCGc -3'
miRNA:   3'- aCGU--UCGGUGGUa----GG--AUUCGUGU-UGC- -5'
23656 5' -51.3 NC_005261.1 + 104153 0.66 0.985968
Target:  5'- gGUcGGCCACCGcgccgUCCgcgGGCGCcGCGc -3'
miRNA:   3'- aCGuUCGGUGGU-----AGGau-UCGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 84857 0.66 0.985968
Target:  5'- cGCGGGCCgcgugGCCAUgaCC-GAGCGC-ACGa -3'
miRNA:   3'- aCGUUCGG-----UGGUA--GGaUUCGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 83844 0.66 0.985968
Target:  5'- gGCGGGCCGCgGcCCcgcUGGGCugGGCc -3'
miRNA:   3'- aCGUUCGGUGgUaGG---AUUCGugUUGc -5'
23656 5' -51.3 NC_005261.1 + 82617 0.66 0.985968
Target:  5'- cGUGAGCCGCCGgaUCagcgAGGC-CGACa -3'
miRNA:   3'- aCGUUCGGUGGU--AGga--UUCGuGUUGc -5'
23656 5' -51.3 NC_005261.1 + 77010 0.66 0.985968
Target:  5'- cGCGcGCCGCCcUCCUc-GC-CGACGc -3'
miRNA:   3'- aCGUuCGGUGGuAGGAuuCGuGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 123422 0.66 0.985968
Target:  5'- gGCGGGCuCGCCAcgggCCgcAGcCGCAGCu -3'
miRNA:   3'- aCGUUCG-GUGGUa---GGauUC-GUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 124825 0.66 0.984129
Target:  5'- cGUAGGCC-UCAUCU--GGCACAAgGu -3'
miRNA:   3'- aCGUUCGGuGGUAGGauUCGUGUUgC- -5'
23656 5' -51.3 NC_005261.1 + 46014 0.66 0.984129
Target:  5'- gGCAGGCgA-UGUCCggGAGCAgGACGg -3'
miRNA:   3'- aCGUUCGgUgGUAGGa-UUCGUgUUGC- -5'
23656 5' -51.3 NC_005261.1 + 63444 0.66 0.984129
Target:  5'- cGUAGGCCgcGCCcgCC-GAGCGCccGCGa -3'
miRNA:   3'- aCGUUCGG--UGGuaGGaUUCGUGu-UGC- -5'
23656 5' -51.3 NC_005261.1 + 134347 0.66 0.984129
Target:  5'- cGCAAGCCcCCGcgCCgccGCGCGGgGg -3'
miRNA:   3'- aCGUUCGGuGGUa-GGauuCGUGUUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.