miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 80186 0.66 0.97991
Target:  5'- aGCGuGCCAgC-UCCUGcaGGUACAGCu -3'
miRNA:   3'- aCGUuCGGUgGuAGGAU--UCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 104334 0.66 0.97991
Target:  5'- cGCGuccAGCgGCCggCCgucGCGCAGCGc -3'
miRNA:   3'- aCGU---UCGgUGGuaGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 71447 0.66 0.97991
Target:  5'- cGCGcAGCCGCCGccUCCcgGAGCAuCAGg- -3'
miRNA:   3'- aCGU-UCGGUGGU--AGGa-UUCGU-GUUgc -5'
23656 5' -51.3 NC_005261.1 + 107935 0.66 0.977511
Target:  5'- cGCGGaucGCCGCCAcguagUCCgu-GCGCGGCc -3'
miRNA:   3'- aCGUU---CGGUGGU-----AGGauuCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 72477 0.66 0.97991
Target:  5'- cGCGAGCgCgGCCAgcgCCagGAGCGCcGCGc -3'
miRNA:   3'- aCGUUCG-G-UGGUa--GGa-UUCGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 101964 0.66 0.977511
Target:  5'- gGCAcGGCCGCCAggucgcccUCC-AGGUACGucACGg -3'
miRNA:   3'- aCGU-UCGGUGGU--------AGGaUUCGUGU--UGC- -5'
23656 5' -51.3 NC_005261.1 + 86510 0.66 0.97991
Target:  5'- gGCAggGGCuUGCCGUCCUuguCGCAGCGc -3'
miRNA:   3'- aCGU--UCG-GUGGUAGGAuucGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 37169 0.66 0.97991
Target:  5'- cGCGcGCUugCG-CCUGGGCGCugcuGGCGg -3'
miRNA:   3'- aCGUuCGGugGUaGGAUUCGUG----UUGC- -5'
23656 5' -51.3 NC_005261.1 + 39214 0.66 0.97991
Target:  5'- cGguAGCCGCCAUggcCCUcgcGCGCGccgGCGa -3'
miRNA:   3'- aCguUCGGUGGUA---GGAuu-CGUGU---UGC- -5'
23656 5' -51.3 NC_005261.1 + 3778 0.66 0.979679
Target:  5'- gGCAGGCCGC-------AGCGCAGCGg -3'
miRNA:   3'- aCGUUCGGUGguaggauUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 131819 0.66 0.985968
Target:  5'- gGCGcGCCGCCG-CUUGA-CGCGGCGc -3'
miRNA:   3'- aCGUuCGGUGGUaGGAUUcGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 79210 0.66 0.977511
Target:  5'- gGCGAuGCCugacACgGUCgaGAGCGCGGCGc -3'
miRNA:   3'- aCGUU-CGG----UGgUAGgaUUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 74732 0.66 0.977511
Target:  5'- gGCAgcGGCCGCggaCAaCCUGcuGGCGCGGCa -3'
miRNA:   3'- aCGU--UCGGUG---GUaGGAU--UCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 47289 0.66 0.977511
Target:  5'- cGCGuGCCACUGUgCgagcacGAGCAUGGCGg -3'
miRNA:   3'- aCGUuCGGUGGUAgGa-----UUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 5126 0.66 0.97991
Target:  5'- cGCGGGCgGCCcgCC--GGCGCucGCGc -3'
miRNA:   3'- aCGUUCGgUGGuaGGauUCGUGu-UGC- -5'
23656 5' -51.3 NC_005261.1 + 62361 0.66 0.97991
Target:  5'- cGCGcGCCACCAgcucgcgcgCCUGcGGCAgCGGCa -3'
miRNA:   3'- aCGUuCGGUGGUa--------GGAU-UCGU-GUUGc -5'
23656 5' -51.3 NC_005261.1 + 30038 0.66 0.977511
Target:  5'- aGCGGGCCGCgG-CCUGccGGcCGCGGCc -3'
miRNA:   3'- aCGUUCGGUGgUaGGAU--UC-GUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 55012 0.66 0.978495
Target:  5'- gUGCAcaacgacgcucccguAGCCGCCggCCcc-GCGCAGCu -3'
miRNA:   3'- -ACGU---------------UCGGUGGuaGGauuCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 118193 0.66 0.97726
Target:  5'- cGCGGGCC-CCGcgCCUGccgcgcugcgcggGGCGCuGACGg -3'
miRNA:   3'- aCGUUCGGuGGUa-GGAU-------------UCGUG-UUGC- -5'
23656 5' -51.3 NC_005261.1 + 72966 0.66 0.97991
Target:  5'- cGCGcccGCCGCCGcgggggUCCgcGAGCGCGGCc -3'
miRNA:   3'- aCGUu--CGGUGGU------AGGa-UUCGUGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.