miRNA display CGI


Results 21 - 40 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 9967 0.66 0.981255
Target:  5'- gGCAAGcCCGCCcccccggacgcgCCUcGGCGCGGCc -3'
miRNA:   3'- aCGUUC-GGUGGua----------GGAuUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 126066 0.66 0.97991
Target:  5'- cGCcAGCCGCCcgCC--GGCcuCGGCGg -3'
miRNA:   3'- aCGuUCGGUGGuaGGauUCGu-GUUGC- -5'
23656 5' -51.3 NC_005261.1 + 79210 0.66 0.977511
Target:  5'- gGCGAuGCCugacACgGUCgaGAGCGCGGCGc -3'
miRNA:   3'- aCGUU-CGG----UGgUAGgaUUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 129716 0.66 0.984129
Target:  5'- gGCAGGcCCGCCGg-CUGcagcGGCAgGGCGg -3'
miRNA:   3'- aCGUUC-GGUGGUagGAU----UCGUgUUGC- -5'
23656 5' -51.3 NC_005261.1 + 86590 0.66 0.97991
Target:  5'- gGCGGcGgCGCCGUCCUuGGCGuCGGCc -3'
miRNA:   3'- aCGUU-CgGUGGUAGGAuUCGU-GUUGc -5'
23656 5' -51.3 NC_005261.1 + 109348 0.66 0.982113
Target:  5'- gGCGGccgcGUCGCCGUCCagccgcucGAGCGCGGCc -3'
miRNA:   3'- aCGUU----CGGUGGUAGGa-------UUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 98070 0.66 0.982113
Target:  5'- cGCGGGCgGCgggugUGUCCUuggagaaucuggGGGCGCGGCGg -3'
miRNA:   3'- aCGUUCGgUG-----GUAGGA------------UUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 66857 0.66 0.983543
Target:  5'- gUGCAcacGCCGCCAccgagagcccaagcUCCaggAAGCGCAccaGCGu -3'
miRNA:   3'- -ACGUu--CGGUGGU--------------AGGa--UUCGUGU---UGC- -5'
23656 5' -51.3 NC_005261.1 + 55012 0.66 0.978495
Target:  5'- gUGCAcaacgacgcucccguAGCCGCCggCCcc-GCGCAGCu -3'
miRNA:   3'- -ACGU---------------UCGGUGGuaGGauuCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 62361 0.66 0.97991
Target:  5'- cGCGcGCCACCAgcucgcgcgCCUGcGGCAgCGGCa -3'
miRNA:   3'- aCGUuCGGUGGUa--------GGAU-UCGU-GUUGc -5'
23656 5' -51.3 NC_005261.1 + 80186 0.66 0.97991
Target:  5'- aGCGuGCCAgC-UCCUGcaGGUACAGCu -3'
miRNA:   3'- aCGUuCGGUgGuAGGAU--UCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 118193 0.66 0.97726
Target:  5'- cGCGGGCC-CCGcgCCUGccgcgcugcgcggGGCGCuGACGg -3'
miRNA:   3'- aCGUUCGGuGGUa-GGAU-------------UCGUG-UUGC- -5'
23656 5' -51.3 NC_005261.1 + 100229 0.66 0.984129
Target:  5'- aGCucGGCCACCG-CC-GGGCGC-ACGu -3'
miRNA:   3'- aCGu-UCGGUGGUaGGaUUCGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 17480 0.66 0.982113
Target:  5'- cGCGGGCgCGCCGgggggUCCUAGacGCGgAGCa -3'
miRNA:   3'- aCGUUCG-GUGGU-----AGGAUU--CGUgUUGc -5'
23656 5' -51.3 NC_005261.1 + 74732 0.66 0.977511
Target:  5'- gGCAgcGGCCGCggaCAaCCUGcuGGCGCGGCa -3'
miRNA:   3'- aCGU--UCGGUG---GUaGGAU--UCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 104334 0.66 0.97991
Target:  5'- cGCGuccAGCgGCCggCCgucGCGCAGCGc -3'
miRNA:   3'- aCGU---UCGgUGGuaGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 59982 0.66 0.983344
Target:  5'- --gAAGgCGCCGUCCgcacccucgggcAGCGCGACGg -3'
miRNA:   3'- acgUUCgGUGGUAGGau----------UCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 3778 0.66 0.979679
Target:  5'- gGCAGGCCGC-------AGCGCAGCGg -3'
miRNA:   3'- aCGUUCGGUGguaggauUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 88204 0.66 0.984129
Target:  5'- gGCGGGCCGCg--CCggcAAGCGCG-CGg -3'
miRNA:   3'- aCGUUCGGUGguaGGa--UUCGUGUuGC- -5'
23656 5' -51.3 NC_005261.1 + 101964 0.66 0.977511
Target:  5'- gGCAcGGCCGCCAggucgcccUCC-AGGUACGucACGg -3'
miRNA:   3'- aCGU-UCGGUGGU--------AGGaUUCGUGU--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.