miRNA display CGI


Results 41 - 60 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 107450 0.66 0.985968
Target:  5'- cGUuGGCCACCG-CCccGGCACcGCa -3'
miRNA:   3'- aCGuUCGGUGGUaGGauUCGUGuUGc -5'
23656 5' -51.3 NC_005261.1 + 19541 0.66 0.985968
Target:  5'- cGCGucaCCGCCAgcgCCgugggGAGCGcCAGCGg -3'
miRNA:   3'- aCGUuc-GGUGGUa--GGa----UUCGU-GUUGC- -5'
23656 5' -51.3 NC_005261.1 + 39214 0.66 0.97991
Target:  5'- cGguAGCCGCCAUggcCCUcgcGCGCGccgGCGa -3'
miRNA:   3'- aCguUCGGUGGUA---GGAuu-CGUGU---UGC- -5'
23656 5' -51.3 NC_005261.1 + 88204 0.66 0.984129
Target:  5'- gGCGGGCCGCg--CCggcAAGCGCG-CGg -3'
miRNA:   3'- aCGUUCGGUGguaGGa--UUCGUGUuGC- -5'
23656 5' -51.3 NC_005261.1 + 71058 0.66 0.985968
Target:  5'- cGUggGCCAgCcgCC---GCGCGGCGg -3'
miRNA:   3'- aCGuuCGGUgGuaGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 59982 0.66 0.983344
Target:  5'- --gAAGgCGCCGUCCgcacccucgggcAGCGCGACGg -3'
miRNA:   3'- acgUUCgGUGGUAGGau----------UCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 86510 0.66 0.97991
Target:  5'- gGCAggGGCuUGCCGUCCUuguCGCAGCGc -3'
miRNA:   3'- aCGU--UCG-GUGGUAGGAuucGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 104334 0.66 0.97991
Target:  5'- cGCGuccAGCgGCCggCCgucGCGCAGCGc -3'
miRNA:   3'- aCGU---UCGgUGGuaGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 37169 0.66 0.97991
Target:  5'- cGCGcGCUugCG-CCUGGGCGCugcuGGCGg -3'
miRNA:   3'- aCGUuCGGugGUaGGAUUCGUG----UUGC- -5'
23656 5' -51.3 NC_005261.1 + 80186 0.66 0.97991
Target:  5'- aGCGuGCCAgC-UCCUGcaGGUACAGCu -3'
miRNA:   3'- aCGUuCGGUgGuAGGAU--UCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 47289 0.66 0.977511
Target:  5'- cGCGuGCCACUGUgCgagcacGAGCAUGGCGg -3'
miRNA:   3'- aCGUuCGGUGGUAgGa-----UUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 109348 0.66 0.982113
Target:  5'- gGCGGccgcGUCGCCGUCCagccgcucGAGCGCGGCc -3'
miRNA:   3'- aCGUU----CGGUGGUAGGa-------UUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 73779 0.66 0.985968
Target:  5'- cGCuGGCCugCGaCgUGcGCGCGGCGg -3'
miRNA:   3'- aCGuUCGGugGUaGgAUuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 98070 0.66 0.982113
Target:  5'- cGCGGGCgGCgggugUGUCCUuggagaaucuggGGGCGCGGCGg -3'
miRNA:   3'- aCGUUCGgUG-----GUAGGA------------UUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 129716 0.66 0.984129
Target:  5'- gGCAGGcCCGCCGg-CUGcagcGGCAgGGCGg -3'
miRNA:   3'- aCGUUC-GGUGGUagGAU----UCGUgUUGC- -5'
23656 5' -51.3 NC_005261.1 + 108744 0.66 0.97991
Target:  5'- gGCGGcGCCGCggCGUCCgcGGCGCGccGCGc -3'
miRNA:   3'- aCGUU-CGGUG--GUAGGauUCGUGU--UGC- -5'
23656 5' -51.3 NC_005261.1 + 62042 0.66 0.985968
Target:  5'- cGCGgcucGGCCGgC-UCC-AGGCGCAGCa -3'
miRNA:   3'- aCGU----UCGGUgGuAGGaUUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 134347 0.66 0.984129
Target:  5'- cGCAAGCCcCCGcgCCgccGCGCGGgGg -3'
miRNA:   3'- aCGUUCGGuGGUa-GGauuCGUGUUgC- -5'
23656 5' -51.3 NC_005261.1 + 131161 0.66 0.982113
Target:  5'- cGCucGCCGCCuUCUgcuGCcGCAGCGg -3'
miRNA:   3'- aCGuuCGGUGGuAGGauuCG-UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 29882 0.66 0.982113
Target:  5'- cGCu-GCCGCCAgcgCCcGGGCccgcgGCAGCGc -3'
miRNA:   3'- aCGuuCGGUGGUa--GGaUUCG-----UGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.