miRNA display CGI


Results 61 - 80 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 131749 0.67 0.974908
Target:  5'- cGCGgacGGCaCGCCggCC--GGCGCGGCGg -3'
miRNA:   3'- aCGU---UCG-GUGGuaGGauUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 87032 0.67 0.974908
Target:  5'- cGCGcGCCACCGcgUCC-AGGCugcgcacacGCAGCGc -3'
miRNA:   3'- aCGUuCGGUGGU--AGGaUUCG---------UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 97798 0.67 0.961926
Target:  5'- gGCcGGCgACCGUCCgccGGCGCccccgcaGACGg -3'
miRNA:   3'- aCGuUCGgUGGUAGGau-UCGUG-------UUGC- -5'
23656 5' -51.3 NC_005261.1 + 129190 0.67 0.974908
Target:  5'- cGCAGGCCAgCG-CgU-GGCGCAGCu -3'
miRNA:   3'- aCGUUCGGUgGUaGgAuUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 34071 0.67 0.962289
Target:  5'- cUGCcuGGCCugCAUCCgccgcuGGCugGAgGg -3'
miRNA:   3'- -ACGu-UCGGugGUAGGau----UCGugUUgC- -5'
23656 5' -51.3 NC_005261.1 + 39444 0.67 0.962289
Target:  5'- cGCAgGGCC-CCGagCCUccGCGCGGCGc -3'
miRNA:   3'- aCGU-UCGGuGGUa-GGAuuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 103903 0.67 0.962289
Target:  5'- aGcCGGGCCACCcgcgCCgccaggucGGGCGCGGCGu -3'
miRNA:   3'- aC-GUUCGGUGGua--GGa-------UUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 88783 0.67 0.962289
Target:  5'- gGCccuGGCCGCCGgcgCCgcgcAGCAgGACGc -3'
miRNA:   3'- aCGu--UCGGUGGUa--GGau--UCGUgUUGC- -5'
23656 5' -51.3 NC_005261.1 + 28884 0.67 0.962289
Target:  5'- cGCGGacGCCGCCG-CCUGcGCcCAACGc -3'
miRNA:   3'- aCGUU--CGGUGGUaGGAUuCGuGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 36559 0.67 0.974908
Target:  5'- gGCGAGCCuaGCCGagCUGAGCGgGggcccgccGCGg -3'
miRNA:   3'- aCGUUCGG--UGGUagGAUUCGUgU--------UGC- -5'
23656 5' -51.3 NC_005261.1 + 42229 0.67 0.974908
Target:  5'- cGCGAGCU-CCG-CCgc-GCGCAGCGc -3'
miRNA:   3'- aCGUUCGGuGGUaGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 50022 0.67 0.974908
Target:  5'- cGCGGGCgC-CCAgCCgccGCGCGACGg -3'
miRNA:   3'- aCGUUCG-GuGGUaGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 101004 0.67 0.974908
Target:  5'- cGCcAGCCGCgCGUCC--AGCGCGccugugaacGCGg -3'
miRNA:   3'- aCGuUCGGUG-GUAGGauUCGUGU---------UGC- -5'
23656 5' -51.3 NC_005261.1 + 23171 0.67 0.965789
Target:  5'- gGCAGGCgCGCCGg---GGGCgACAGCGa -3'
miRNA:   3'- aCGUUCG-GUGGUaggaUUCG-UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 59763 0.67 0.965789
Target:  5'- gGCAGGCCuCCAUgugcucggCCgcAGCgACGGCGg -3'
miRNA:   3'- aCGUUCGGuGGUA--------GGauUCG-UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 48004 0.67 0.96545
Target:  5'- cGCA-GCCGCCGUcgccccgCCggcaGAGCAgGGCGa -3'
miRNA:   3'- aCGUuCGGUGGUA-------GGa---UUCGUgUUGC- -5'
23656 5' -51.3 NC_005261.1 + 25791 0.67 0.963718
Target:  5'- gGCGAGCaggauggagcucaggCGCCAUCUgguGGCGCcGCGc -3'
miRNA:   3'- aCGUUCG---------------GUGGUAGGau-UCGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 86921 0.67 0.962289
Target:  5'- cGCGuccaccGCCGCCG-CCgc-GCGCGGCGg -3'
miRNA:   3'- aCGUu-----CGGUGGUaGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 79141 0.67 0.965789
Target:  5'- gGC-GGCCACCAgcCCggcGAGCACcAGCa -3'
miRNA:   3'- aCGuUCGGUGGUa-GGa--UUCGUG-UUGc -5'
23656 5' -51.3 NC_005261.1 + 62437 0.67 0.962289
Target:  5'- cGCGAGCCggucGCCGggCCccAGCAgCGGCGg -3'
miRNA:   3'- aCGUUCGG----UGGUa-GGauUCGU-GUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.