Results 81 - 100 of 222 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 52350 | 0.69 | 0.925213 |
Target: 5'- cGCGcuGCCGCCGgagCCgGAGCccGCGGCGg -3' miRNA: 3'- aCGUu-CGGUGGUa--GGaUUCG--UGUUGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 32429 | 0.69 | 0.925213 |
Target: 5'- cGgGAGCCccGCCggCCUGGGCGcCGGCa -3' miRNA: 3'- aCgUUCGG--UGGuaGGAUUCGU-GUUGc -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 2429 | 0.69 | 0.925213 |
Target: 5'- gGCGGGCCGCgAUCUc-GGC-CAGCGc -3' miRNA: 3'- aCGUUCGGUGgUAGGauUCGuGUUGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 94393 | 0.69 | 0.924643 |
Target: 5'- cGCGgcGGCgGCC-UCCUcgacgaaGGGCGCGACGu -3' miRNA: 3'- aCGU--UCGgUGGuAGGA-------UUCGUGUUGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 134462 | 0.69 | 0.9194 |
Target: 5'- cGCucuaccuGGCCGCCAUCgUGGGCG--GCGu -3' miRNA: 3'- aCGu------UCGGUGGUAGgAUUCGUguUGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 75551 | 0.69 | 0.9194 |
Target: 5'- cGCGuccuGCCgGCCAUCCccgGGGCGCugGGCGg -3' miRNA: 3'- aCGUu---CGG-UGGUAGGa--UUCGUG--UUGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 33382 | 0.68 | 0.945819 |
Target: 5'- cUGCGGGCCGCCGcagCCgccGcCGCAGCc -3' miRNA: 3'- -ACGUUCGGUGGUa--GGauuC-GUGUUGc -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 47664 | 0.68 | 0.945819 |
Target: 5'- gGCcAGCCGCagcgCC-GAGCGCAGCa -3' miRNA: 3'- aCGuUCGGUGgua-GGaUUCGUGUUGc -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 54811 | 0.68 | 0.945819 |
Target: 5'- cGUAGGCCACCAggUCCgcgucauacgcGGGCAgGGCu -3' miRNA: 3'- aCGUUCGGUGGU--AGGa----------UUCGUgUUGc -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 124757 | 0.68 | 0.945819 |
Target: 5'- cGCAgcGGCCGCC-UCC-AGGCugAggaGCGg -3' miRNA: 3'- aCGU--UCGGUGGuAGGaUUCGugU---UGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 99869 | 0.68 | 0.945819 |
Target: 5'- cGCGcGCCGCCG-CCgcucGGCGCGAgGg -3' miRNA: 3'- aCGUuCGGUGGUaGGau--UCGUGUUgC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 4023 | 0.68 | 0.950316 |
Target: 5'- cGCAGGCCGCCA-CgUGcggcAGCgcccACAGCGc -3' miRNA: 3'- aCGUUCGGUGGUaGgAU----UCG----UGUUGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 28596 | 0.68 | 0.945819 |
Target: 5'- gGCGGGCCGCCcgCgCcGAGCugG-CGg -3' miRNA: 3'- aCGUUCGGUGGuaG-GaUUCGugUuGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 7885 | 0.68 | 0.945819 |
Target: 5'- aGCGAGCgGCUcuguUCC--GGCGCGGCGc -3' miRNA: 3'- aCGUUCGgUGGu---AGGauUCGUGUUGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 42193 | 0.68 | 0.941062 |
Target: 5'- cGCGAGCCGC--UCCacGGCGCcGCGc -3' miRNA: 3'- aCGUUCGGUGguAGGauUCGUGuUGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 96744 | 0.68 | 0.941062 |
Target: 5'- nGCGAGUC-CCggCCUGGGcCGCGGCc -3' miRNA: 3'- aCGUUCGGuGGuaGGAUUC-GUGUUGc -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 92340 | 0.68 | 0.941062 |
Target: 5'- cGCGGGCCACCgGUCac-GGUGCAGgCGg -3' miRNA: 3'- aCGUUCGGUGG-UAGgauUCGUGUU-GC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 90668 | 0.68 | 0.941062 |
Target: 5'- cGC-GGCCACCGUgacgaCCaucGGGCGCGACa -3' miRNA: 3'- aCGuUCGGUGGUA-----GGa--UUCGUGUUGc -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 1488 | 0.68 | 0.941062 |
Target: 5'- cGCAgaaGGCCACCG-CCgcGGCcgGCAGCu -3' miRNA: 3'- aCGU---UCGGUGGUaGGauUCG--UGUUGc -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 46478 | 0.68 | 0.950316 |
Target: 5'- cGCAGGUgcagcucggCGCCcUCCgcgGGGCGCAGCc -3' miRNA: 3'- aCGUUCG---------GUGGuAGGa--UUCGUGUUGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home