miRNA display CGI


Results 21 - 40 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 133096 0.72 0.783591
Target:  5'- cGCAAGgCCGCCGUCaaccGCGCGGCc -3'
miRNA:   3'- aCGUUC-GGUGGUAGgauuCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 105130 0.72 0.811971
Target:  5'- cGCGGGCCGCCGgcgcgcgcaggUCCUcgcggcucGAGgGCGGCGu -3'
miRNA:   3'- aCGUUCGGUGGU-----------AGGA--------UUCgUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 92097 0.72 0.821083
Target:  5'- cGCAcGCCcCCGUCCcgcAGCACGugGu -3'
miRNA:   3'- aCGUuCGGuGGUAGGau-UCGUGUugC- -5'
23656 5' -51.3 NC_005261.1 + 135236 0.72 0.821083
Target:  5'- cGCGucGCCGCCGUCUUugcGGGCGCG-CGg -3'
miRNA:   3'- aCGUu-CGGUGGUAGGA---UUCGUGUuGC- -5'
23656 5' -51.3 NC_005261.1 + 108405 0.71 0.830004
Target:  5'- aGCAGccgcGCCACCGcgCCUGcguGCACGGCa -3'
miRNA:   3'- aCGUU----CGGUGGUa-GGAUu--CGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 23608 0.71 0.838725
Target:  5'- gGCugucGCCGCCGcugCCgGGGCGCGGCGg -3'
miRNA:   3'- aCGuu--CGGUGGUa--GGaUUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 93323 0.71 0.838725
Target:  5'- aGCGGaguguGCCACCAcgUCCgc-GCGCAGCGc -3'
miRNA:   3'- aCGUU-----CGGUGGU--AGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 115996 0.71 0.838725
Target:  5'- cUGaCGAGCCGCCcgaggcggCCUGAGCcgcCGACGg -3'
miRNA:   3'- -AC-GUUCGGUGGua------GGAUUCGu--GUUGC- -5'
23656 5' -51.3 NC_005261.1 + 89394 0.71 0.847239
Target:  5'- cUGCGAccuGCCGCCGgccuUCCUcGGCGCGugcGCGg -3'
miRNA:   3'- -ACGUU---CGGUGGU----AGGAuUCGUGU---UGC- -5'
23656 5' -51.3 NC_005261.1 + 12728 0.71 0.847239
Target:  5'- cGCGGGcCCGCCGgcccCCUGGGCGggccCGGCGa -3'
miRNA:   3'- aCGUUC-GGUGGUa---GGAUUCGU----GUUGC- -5'
23656 5' -51.3 NC_005261.1 + 123199 0.71 0.847239
Target:  5'- gGCGgacccAGCCGCCG-CgUAAGCGCGGCc -3'
miRNA:   3'- aCGU-----UCGGUGGUaGgAUUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 38174 0.71 0.847239
Target:  5'- aGCAcGGCUGCCuggaggCCUGGGCGCGccGCGg -3'
miRNA:   3'- aCGU-UCGGUGGua----GGAUUCGUGU--UGC- -5'
23656 5' -51.3 NC_005261.1 + 135884 0.71 0.847239
Target:  5'- aGCAGGCCugCGgc---AGCACGACGu -3'
miRNA:   3'- aCGUUCGGugGUaggauUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 134974 0.71 0.85307
Target:  5'- cGCAgacggcgaggacggGGCCGCCGgggcgCCccuGGCGCGGCGg -3'
miRNA:   3'- aCGU--------------UCGGUGGUa----GGau-UCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 132479 0.71 0.855536
Target:  5'- gGCAGcGCCucGCCGUCCUGGGacgcgcccgacCGCGACGc -3'
miRNA:   3'- aCGUU-CGG--UGGUAGGAUUC-----------GUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 105946 0.71 0.855536
Target:  5'- cGCGAGCgCGCCGUCgaUGgccucggcgcccAGCGCGGCGu -3'
miRNA:   3'- aCGUUCG-GUGGUAGg-AU------------UCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 102428 0.71 0.855536
Target:  5'- cUGCGcGGCCGCC-UCCUcGGCGCGcCGc -3'
miRNA:   3'- -ACGU-UCGGUGGuAGGAuUCGUGUuGC- -5'
23656 5' -51.3 NC_005261.1 + 5524 0.71 0.863609
Target:  5'- gGCgAGGCCGCCGgcUUCggcGCGCAGCGa -3'
miRNA:   3'- aCG-UUCGGUGGU--AGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 102770 0.71 0.863609
Target:  5'- cGCGAGCgCGCCcgaggCCUcgccccggccgcGAGCGCGGCGc -3'
miRNA:   3'- aCGUUCG-GUGGua---GGA------------UUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 100421 0.71 0.863609
Target:  5'- cGCAucgAGgCGCCcgCCUgcGAGUACAGCGc -3'
miRNA:   3'- aCGU---UCgGUGGuaGGA--UUCGUGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.