miRNA display CGI


Results 41 - 60 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 49091 0.71 0.866774
Target:  5'- cGCGGGcCCGCUGagcgcgcgcagcagcUCCUcGAGCGCGGCGg -3'
miRNA:   3'- aCGUUC-GGUGGU---------------AGGA-UUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 46693 0.7 0.871451
Target:  5'- gGC-GGCCGCCAcggcaUUCgcuAGCGCGACGa -3'
miRNA:   3'- aCGuUCGGUGGU-----AGGau-UCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 119122 0.7 0.871451
Target:  5'- aUGUAGGCCGCgG-CCgcGGCGCGGCc -3'
miRNA:   3'- -ACGUUCGGUGgUaGGauUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 92416 0.7 0.878305
Target:  5'- gGCAauuaucGGCCACCGUCCgcgAgaggucgaacgggAGCACcACGg -3'
miRNA:   3'- aCGU------UCGGUGGUAGGa--U-------------UCGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 100941 0.7 0.879055
Target:  5'- cUGCAGGCC-CgCGUCCacGGCGCGcGCGg -3'
miRNA:   3'- -ACGUUCGGuG-GUAGGauUCGUGU-UGC- -5'
23656 5' -51.3 NC_005261.1 + 94090 0.7 0.879055
Target:  5'- gGgAAcGCCGCCGUCCgugcggAAGCAC-ACGu -3'
miRNA:   3'- aCgUU-CGGUGGUAGGa-----UUCGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 63059 0.7 0.879055
Target:  5'- aGCAGcGCCG-CGUCgCUGGcGCACAGCGg -3'
miRNA:   3'- aCGUU-CGGUgGUAG-GAUU-CGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 106313 0.7 0.886415
Target:  5'- aGCAGGUCuuCCGUCgUGAGcCACGGCc -3'
miRNA:   3'- aCGUUCGGu-GGUAGgAUUC-GUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 88435 0.7 0.886415
Target:  5'- cGCGGGCCACCGcUgCUGGccGCGCcGCGu -3'
miRNA:   3'- aCGUUCGGUGGU-AgGAUU--CGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 93926 0.7 0.886415
Target:  5'- cGCGGGCUugcGCCGUCCgcgGGCGCcGCc -3'
miRNA:   3'- aCGUUCGG---UGGUAGGau-UCGUGuUGc -5'
23656 5' -51.3 NC_005261.1 + 64466 0.7 0.893526
Target:  5'- aGUuGGCCACCAgguucgCC-GGGUGCAGCGg -3'
miRNA:   3'- aCGuUCGGUGGUa-----GGaUUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 96722 0.7 0.893526
Target:  5'- gGCGGG-CACCA-CCcGGGCGCGGCGc -3'
miRNA:   3'- aCGUUCgGUGGUaGGaUUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 113055 0.7 0.893526
Target:  5'- gGCGcGCCACCGcUCgCUGGGCAuCGGCu -3'
miRNA:   3'- aCGUuCGGUGGU-AG-GAUUCGU-GUUGc -5'
23656 5' -51.3 NC_005261.1 + 98185 0.69 0.906984
Target:  5'- --gGAGCCGCCGg---GGGCGCGGCGg -3'
miRNA:   3'- acgUUCGGUGGUaggaUUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 49044 0.69 0.906984
Target:  5'- cGCAGGCaGCCG-CC-GAGCACGGCc -3'
miRNA:   3'- aCGUUCGgUGGUaGGaUUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 48695 0.69 0.906984
Target:  5'- cGCGGGCCAUCAcgCCggcGGGCgugauguuGCAACGg -3'
miRNA:   3'- aCGUUCGGUGGUa-GGa--UUCG--------UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 69275 0.69 0.913324
Target:  5'- gGCGAGCCGCCcgcgCCgaccccGGCGCGggGCGc -3'
miRNA:   3'- aCGUUCGGUGGua--GGau----UCGUGU--UGC- -5'
23656 5' -51.3 NC_005261.1 + 98676 0.69 0.913324
Target:  5'- gGCGGGCUccGCCGgggCCggAGGCGCGGCc -3'
miRNA:   3'- aCGUUCGG--UGGUa--GGa-UUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 49800 0.69 0.913324
Target:  5'- cGCGAgacGUCGCCcUCCgcgGGGCGCGugGa -3'
miRNA:   3'- aCGUU---CGGUGGuAGGa--UUCGUGUugC- -5'
23656 5' -51.3 NC_005261.1 + 55925 0.69 0.913324
Target:  5'- cGC-AGCCGCCG-CCggcGCGCAGCc -3'
miRNA:   3'- aCGuUCGGUGGUaGGauuCGUGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.