miRNA display CGI


Results 61 - 80 of 222 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 134462 0.69 0.9194
Target:  5'- cGCucuaccuGGCCGCCAUCgUGGGCG--GCGu -3'
miRNA:   3'- aCGu------UCGGUGGUAGgAUUCGUguUGC- -5'
23656 5' -51.3 NC_005261.1 + 75551 0.69 0.9194
Target:  5'- cGCGuccuGCCgGCCAUCCccgGGGCGCugGGCGg -3'
miRNA:   3'- aCGUu---CGG-UGGUAGGa--UUCGUG--UUGC- -5'
23656 5' -51.3 NC_005261.1 + 47097 0.69 0.9194
Target:  5'- gGCGGGCCAgagcCCGUCCgUGAGgACGugcGCGu -3'
miRNA:   3'- aCGUUCGGU----GGUAGG-AUUCgUGU---UGC- -5'
23656 5' -51.3 NC_005261.1 + 39542 0.69 0.9194
Target:  5'- cGC-GGCCGCCAgccCCgcgcgcGCGCGGCGg -3'
miRNA:   3'- aCGuUCGGUGGUa--GGauu---CGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 94393 0.69 0.924643
Target:  5'- cGCGgcGGCgGCC-UCCUcgacgaaGGGCGCGACGu -3'
miRNA:   3'- aCGU--UCGgUGGuAGGA-------UUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 88474 0.69 0.925213
Target:  5'- gGCGGGCCguGCCGcgCCgGAGCGCGccGCGc -3'
miRNA:   3'- aCGUUCGG--UGGUa-GGaUUCGUGU--UGC- -5'
23656 5' -51.3 NC_005261.1 + 57516 0.69 0.925213
Target:  5'- gGCGGGCCuuCuUCCacAGGCACGGCGc -3'
miRNA:   3'- aCGUUCGGugGuAGGa-UUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 52350 0.69 0.925213
Target:  5'- cGCGcuGCCGCCGgagCCgGAGCccGCGGCGg -3'
miRNA:   3'- aCGUu-CGGUGGUa--GGaUUCG--UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 32429 0.69 0.925213
Target:  5'- cGgGAGCCccGCCggCCUGGGCGcCGGCa -3'
miRNA:   3'- aCgUUCGG--UGGuaGGAUUCGU-GUUGc -5'
23656 5' -51.3 NC_005261.1 + 2429 0.69 0.925213
Target:  5'- gGCGGGCCGCgAUCUc-GGC-CAGCGc -3'
miRNA:   3'- aCGUUCGGUGgUAGGauUCGuGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 95148 0.69 0.93076
Target:  5'- cUGCuGGUCGCCGggaaCCUGcAGUGCGGCGa -3'
miRNA:   3'- -ACGuUCGGUGGUa---GGAU-UCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 81261 0.69 0.93076
Target:  5'- cGCGaguucuccccGGCCGCCugcgcgagCCgGAGCGCGGCGc -3'
miRNA:   3'- aCGU----------UCGGUGGua------GGaUUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 66091 0.69 0.93076
Target:  5'- aUGCGcGGCCACguCAUCCagcccGCGCAGCGc -3'
miRNA:   3'- -ACGU-UCGGUG--GUAGGauu--CGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 14063 0.69 0.93076
Target:  5'- gGCAGGCCG-CGUCCaGGGCcacguCGGCGa -3'
miRNA:   3'- aCGUUCGGUgGUAGGaUUCGu----GUUGC- -5'
23656 5' -51.3 NC_005261.1 + 111416 0.69 0.93076
Target:  5'- gGCGGGCCACacgCCggcGGGCAagaGACGg -3'
miRNA:   3'- aCGUUCGGUGguaGGa--UUCGUg--UUGC- -5'
23656 5' -51.3 NC_005261.1 + 106893 0.69 0.93076
Target:  5'- cUGCAGcGCCugCGUCgUccGCGCcGCGg -3'
miRNA:   3'- -ACGUU-CGGugGUAGgAuuCGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 86830 0.69 0.93076
Target:  5'- gUGUcGGCCGCCAUCaccgAGGC-CAGCc -3'
miRNA:   3'- -ACGuUCGGUGGUAGga--UUCGuGUUGc -5'
23656 5' -51.3 NC_005261.1 + 81940 0.69 0.93076
Target:  5'- aGCAGGCC-CaCGUUCUccacgcuaAAGUACAGCGc -3'
miRNA:   3'- aCGUUCGGuG-GUAGGA--------UUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 118901 0.69 0.932905
Target:  5'- cUGguGGCCugCGUCUggguccggcgccgcGGGCGCGGCGc -3'
miRNA:   3'- -ACguUCGGugGUAGGa-------------UUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 90586 0.69 0.934486
Target:  5'- aGCAGGCCGCCAUCaaggucguguguaaCUcgguGUACGGCu -3'
miRNA:   3'- aCGUUCGGUGGUAG--------------GAuu--CGUGUUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.