miRNA display CGI


Results 81 - 100 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 70673 0.69 0.935527
Target:  5'- cGCGGGCCGCaccuccagccaggCGUCC--AGCGCGGCc -3'
miRNA:   3'- aCGUUCGGUG-------------GUAGGauUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 23273 0.69 0.935527
Target:  5'- aGCAGcGCCucccagcACgCGUCCgUGGGCACAGCa -3'
miRNA:   3'- aCGUU-CGG-------UG-GUAGG-AUUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 97931 0.69 0.936043
Target:  5'- cUGUAcuGGCCGCCAgcUCC--GGCgGCAACGa -3'
miRNA:   3'- -ACGU--UCGGUGGU--AGGauUCG-UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 21790 0.69 0.936043
Target:  5'- cGCGGGCCGCCGcagCCgccGGCcgggccgggcccGCGGCGg -3'
miRNA:   3'- aCGUUCGGUGGUa--GGau-UCG------------UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 38292 0.69 0.936043
Target:  5'- cGCGGuGCUgGCCcgCCUGAGCGCGcaggGCGg -3'
miRNA:   3'- aCGUU-CGG-UGGuaGGAUUCGUGU----UGC- -5'
23656 5' -51.3 NC_005261.1 + 103593 0.69 0.936043
Target:  5'- cGCucGCCGCCGUggCCgcGGCgGCAGCGc -3'
miRNA:   3'- aCGuuCGGUGGUA--GGauUCG-UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 42193 0.68 0.941062
Target:  5'- cGCGAGCCGC--UCCacGGCGCcGCGc -3'
miRNA:   3'- aCGUUCGGUGguAGGauUCGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 96744 0.68 0.941062
Target:  5'- nGCGAGUC-CCggCCUGGGcCGCGGCc -3'
miRNA:   3'- aCGUUCGGuGGuaGGAUUC-GUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 92340 0.68 0.941062
Target:  5'- cGCGGGCCACCgGUCac-GGUGCAGgCGg -3'
miRNA:   3'- aCGUUCGGUGG-UAGgauUCGUGUU-GC- -5'
23656 5' -51.3 NC_005261.1 + 90668 0.68 0.941062
Target:  5'- cGC-GGCCACCGUgacgaCCaucGGGCGCGACa -3'
miRNA:   3'- aCGuUCGGUGGUA-----GGa--UUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 1488 0.68 0.941062
Target:  5'- cGCAgaaGGCCACCG-CCgcGGCcgGCAGCu -3'
miRNA:   3'- aCGU---UCGGUGGUaGGauUCG--UGUUGc -5'
23656 5' -51.3 NC_005261.1 + 124657 0.68 0.941062
Target:  5'- cGCAcccGGCCcuCCAaaaUCCUGGGCAgCGGCa -3'
miRNA:   3'- aCGU---UCGGu-GGU---AGGAUUCGU-GUUGc -5'
23656 5' -51.3 NC_005261.1 + 99869 0.68 0.945819
Target:  5'- cGCGcGCCGCCG-CCgcucGGCGCGAgGg -3'
miRNA:   3'- aCGUuCGGUGGUaGGau--UCGUGUUgC- -5'
23656 5' -51.3 NC_005261.1 + 124757 0.68 0.945819
Target:  5'- cGCAgcGGCCGCC-UCC-AGGCugAggaGCGg -3'
miRNA:   3'- aCGU--UCGGUGGuAGGaUUCGugU---UGC- -5'
23656 5' -51.3 NC_005261.1 + 54811 0.68 0.945819
Target:  5'- cGUAGGCCACCAggUCCgcgucauacgcGGGCAgGGCu -3'
miRNA:   3'- aCGUUCGGUGGU--AGGa----------UUCGUgUUGc -5'
23656 5' -51.3 NC_005261.1 + 47664 0.68 0.945819
Target:  5'- gGCcAGCCGCagcgCC-GAGCGCAGCa -3'
miRNA:   3'- aCGuUCGGUGgua-GGaUUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 33382 0.68 0.945819
Target:  5'- cUGCGGGCCGCCGcagCCgccGcCGCAGCc -3'
miRNA:   3'- -ACGUUCGGUGGUa--GGauuC-GUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 28596 0.68 0.945819
Target:  5'- gGCGGGCCGCCcgCgCcGAGCugG-CGg -3'
miRNA:   3'- aCGUUCGGUGGuaG-GaUUCGugUuGC- -5'
23656 5' -51.3 NC_005261.1 + 7885 0.68 0.945819
Target:  5'- aGCGAGCgGCUcuguUCC--GGCGCGGCGc -3'
miRNA:   3'- aCGUUCGgUGGu---AGGauUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 46478 0.68 0.950316
Target:  5'- cGCAGGUgcagcucggCGCCcUCCgcgGGGCGCAGCc -3'
miRNA:   3'- aCGUUCG---------GUGGuAGGa--UUCGUGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.