Results 101 - 120 of 222 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 137571 | 0.68 | 0.950316 |
Target: 5'- cGCGccCCGCCA-CCUAAGCGCGc-- -3' miRNA: 3'- aCGUucGGUGGUaGGAUUCGUGUugc -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 102935 | 0.68 | 0.950316 |
Target: 5'- cGCAGcGCCGCCG-CCgcuGCgGCGGCGg -3' miRNA: 3'- aCGUU-CGGUGGUaGGauuCG-UGUUGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 46478 | 0.68 | 0.950316 |
Target: 5'- cGCAGGUgcagcucggCGCCcUCCgcgGGGCGCAGCc -3' miRNA: 3'- aCGUUCG---------GUGGuAGGa--UUCGUGUUGc -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 4023 | 0.68 | 0.950316 |
Target: 5'- cGCAGGCCGCCA-CgUGcggcAGCgcccACAGCGc -3' miRNA: 3'- aCGUUCGGUGGUaGgAU----UCG----UGUUGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 62616 | 0.68 | 0.951615 |
Target: 5'- gGUAGGCgGCCAUCagcgccagcguguccGGCGCGACGc -3' miRNA: 3'- aCGUUCGgUGGUAGgau------------UCGUGUUGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 131979 | 0.68 | 0.954557 |
Target: 5'- cGCGcGGCCACCAggCCUucGCagucgcggACGGCGa -3' miRNA: 3'- aCGU-UCGGUGGUa-GGAuuCG--------UGUUGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 121826 | 0.68 | 0.954557 |
Target: 5'- cUGCGGGCCGCCG-CggcGGCGCAcCGg -3' miRNA: 3'- -ACGUUCGGUGGUaGgauUCGUGUuGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 71161 | 0.68 | 0.954557 |
Target: 5'- gGCAGGCUcugggaugaACgCGUCC-GGGCGCAGCu -3' miRNA: 3'- aCGUUCGG---------UG-GUAGGaUUCGUGUUGc -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 38254 | 0.68 | 0.954557 |
Target: 5'- gGCucGCaCGCCAgCCUGGGCugGggGCGg -3' miRNA: 3'- aCGuuCG-GUGGUaGGAUUCGugU--UGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 2284 | 0.68 | 0.954557 |
Target: 5'- gGCGGcGCCGCCAgcgCCUccccGgGCAGCGg -3' miRNA: 3'- aCGUU-CGGUGGUa--GGAuu--CgUGUUGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 117060 | 0.68 | 0.954557 |
Target: 5'- cGCAGGCCAgCCuggUUAAGCACGAg- -3' miRNA: 3'- aCGUUCGGU-GGuagGAUUCGUGUUgc -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 19726 | 0.68 | 0.954557 |
Target: 5'- gGCcgAGGCC-CCgAUCUUGAGCACcACGc -3' miRNA: 3'- aCG--UUCGGuGG-UAGGAUUCGUGuUGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 93890 | 0.68 | 0.954557 |
Target: 5'- aGCAgcgcGGUCGCCAgcgaCUGcgGGCGCGGCGc -3' miRNA: 3'- aCGU----UCGGUGGUag--GAU--UCGUGUUGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 118810 | 0.68 | 0.958547 |
Target: 5'- cGUggGCguCugCGcCCUGGGCGCGGCa -3' miRNA: 3'- aCGuuCG--GugGUaGGAUUCGUGUUGc -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 89655 | 0.68 | 0.958547 |
Target: 5'- cGCGGGCCagaACCGcuUCCagAAGCAgAGCa -3' miRNA: 3'- aCGUUCGG---UGGU--AGGa-UUCGUgUUGc -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 66469 | 0.68 | 0.958547 |
Target: 5'- cGCcAGgCGCgCGUCCUcgcGGUACAGCGa -3' miRNA: 3'- aCGuUCgGUG-GUAGGAu--UCGUGUUGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 44027 | 0.68 | 0.958547 |
Target: 5'- gGCGGGCgGCCG-CC---GCGCGGCGg -3' miRNA: 3'- aCGUUCGgUGGUaGGauuCGUGUUGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 110418 | 0.68 | 0.958547 |
Target: 5'- cUGCAGGCCAUgAUCCgcuGC-CAcGCGu -3' miRNA: 3'- -ACGUUCGGUGgUAGGauuCGuGU-UGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 97798 | 0.67 | 0.961926 |
Target: 5'- gGCcGGCgACCGUCCgccGGCGCccccgcaGACGg -3' miRNA: 3'- aCGuUCGgUGGUAGGau-UCGUG-------UUGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 34071 | 0.67 | 0.962289 |
Target: 5'- cUGCcuGGCCugCAUCCgccgcuGGCugGAgGg -3' miRNA: 3'- -ACGu-UCGGugGUAGGau----UCGugUUgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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