miRNA display CGI


Results 21 - 40 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 124825 0.66 0.984129
Target:  5'- cGUAGGCC-UCAUCU--GGCACAAgGu -3'
miRNA:   3'- aCGUUCGGuGGUAGGauUCGUGUUgC- -5'
23656 5' -51.3 NC_005261.1 + 104686 0.66 0.984129
Target:  5'- aGCGccugGGCCACCGccCCgaagagcGGCugGACGg -3'
miRNA:   3'- aCGU----UCGGUGGUa-GGau-----UCGugUUGC- -5'
23656 5' -51.3 NC_005261.1 + 31321 0.66 0.984129
Target:  5'- cGCGGGCgCGCUcgCCgccAGCGCGccgcuGCGg -3'
miRNA:   3'- aCGUUCG-GUGGuaGGau-UCGUGU-----UGC- -5'
23656 5' -51.3 NC_005261.1 + 134347 0.66 0.984129
Target:  5'- cGCAAGCCcCCGcgCCgccGCGCGGgGg -3'
miRNA:   3'- aCGUUCGGuGGUa-GGauuCGUGUUgC- -5'
23656 5' -51.3 NC_005261.1 + 46014 0.66 0.984129
Target:  5'- gGCAGGCgA-UGUCCggGAGCAgGACGg -3'
miRNA:   3'- aCGUUCGgUgGUAGGa-UUCGUgUUGC- -5'
23656 5' -51.3 NC_005261.1 + 57254 0.66 0.983936
Target:  5'- cGCGuGCCGCCGcacacgcUCCgcaucGCGCGGCa -3'
miRNA:   3'- aCGUuCGGUGGU-------AGGauu--CGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 66857 0.66 0.983543
Target:  5'- gUGCAcacGCCGCCAccgagagcccaagcUCCaggAAGCGCAccaGCGu -3'
miRNA:   3'- -ACGUu--CGGUGGU--------------AGGa--UUCGUGU---UGC- -5'
23656 5' -51.3 NC_005261.1 + 59982 0.66 0.983344
Target:  5'- --gAAGgCGCCGUCCgcacccucgggcAGCGCGACGg -3'
miRNA:   3'- acgUUCgGUGGUAGGau----------UCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 131161 0.66 0.982113
Target:  5'- cGCucGCCGCCuUCUgcuGCcGCAGCGg -3'
miRNA:   3'- aCGuuCGGUGGuAGGauuCG-UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 133029 0.66 0.982113
Target:  5'- cGCGGGCgCGCCA-CCgc-GCACGcACGu -3'
miRNA:   3'- aCGUUCG-GUGGUaGGauuCGUGU-UGC- -5'
23656 5' -51.3 NC_005261.1 + 29882 0.66 0.982113
Target:  5'- cGCu-GCCGCCAgcgCCcGGGCccgcgGCAGCGc -3'
miRNA:   3'- aCGuuCGGUGGUa--GGaUUCG-----UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 17480 0.66 0.982113
Target:  5'- cGCGGGCgCGCCGgggggUCCUAGacGCGgAGCa -3'
miRNA:   3'- aCGUUCG-GUGGU-----AGGAUU--CGUgUUGc -5'
23656 5' -51.3 NC_005261.1 + 98070 0.66 0.982113
Target:  5'- cGCGGGCgGCgggugUGUCCUuggagaaucuggGGGCGCGGCGg -3'
miRNA:   3'- aCGUUCGgUG-----GUAGGA------------UUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 109348 0.66 0.982113
Target:  5'- gGCGGccgcGUCGCCGUCCagccgcucGAGCGCGGCc -3'
miRNA:   3'- aCGUU----CGGUGGUAGGa-------UUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 75306 0.66 0.982113
Target:  5'- cGCAccgcGCCACCGUCggcGGCGCG-CGg -3'
miRNA:   3'- aCGUu---CGGUGGUAGgauUCGUGUuGC- -5'
23656 5' -51.3 NC_005261.1 + 9967 0.66 0.981255
Target:  5'- gGCAAGcCCGCCcccccggacgcgCCUcGGCGCGGCc -3'
miRNA:   3'- aCGUUC-GGUGGua----------GGAuUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 104334 0.66 0.97991
Target:  5'- cGCGuccAGCgGCCggCCgucGCGCAGCGc -3'
miRNA:   3'- aCGU---UCGgUGGuaGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 62361 0.66 0.97991
Target:  5'- cGCGcGCCACCAgcucgcgcgCCUGcGGCAgCGGCa -3'
miRNA:   3'- aCGUuCGGUGGUa--------GGAU-UCGU-GUUGc -5'
23656 5' -51.3 NC_005261.1 + 86510 0.66 0.97991
Target:  5'- gGCAggGGCuUGCCGUCCUuguCGCAGCGc -3'
miRNA:   3'- aCGU--UCG-GUGGUAGGAuucGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 72477 0.66 0.97991
Target:  5'- cGCGAGCgCgGCCAgcgCCagGAGCGCcGCGc -3'
miRNA:   3'- aCGUUCG-G-UGGUa--GGa-UUCGUGuUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.