Results 41 - 60 of 222 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 5126 | 0.66 | 0.97991 |
Target: 5'- cGCGGGCgGCCcgCC--GGCGCucGCGc -3' miRNA: 3'- aCGUUCGgUGGuaGGauUCGUGu-UGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 86510 | 0.66 | 0.97991 |
Target: 5'- gGCAggGGCuUGCCGUCCUuguCGCAGCGc -3' miRNA: 3'- aCGU--UCG-GUGGUAGGAuucGUGUUGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 80186 | 0.66 | 0.97991 |
Target: 5'- aGCGuGCCAgC-UCCUGcaGGUACAGCu -3' miRNA: 3'- aCGUuCGGUgGuAGGAU--UCGUGUUGc -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 37169 | 0.66 | 0.97991 |
Target: 5'- cGCGcGCUugCG-CCUGGGCGCugcuGGCGg -3' miRNA: 3'- aCGUuCGGugGUaGGAUUCGUG----UUGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 39214 | 0.66 | 0.97991 |
Target: 5'- cGguAGCCGCCAUggcCCUcgcGCGCGccgGCGa -3' miRNA: 3'- aCguUCGGUGGUA---GGAuu-CGUGU---UGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 126066 | 0.66 | 0.97991 |
Target: 5'- cGCcAGCCGCCcgCC--GGCcuCGGCGg -3' miRNA: 3'- aCGuUCGGUGGuaGGauUCGu-GUUGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 115919 | 0.66 | 0.97991 |
Target: 5'- cGCcGGCCGCCGcgUCCgc-GCGCGGgGc -3' miRNA: 3'- aCGuUCGGUGGU--AGGauuCGUGUUgC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 86590 | 0.66 | 0.97991 |
Target: 5'- gGCGGcGgCGCCGUCCUuGGCGuCGGCc -3' miRNA: 3'- aCGUU-CgGUGGUAGGAuUCGU-GUUGc -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 108744 | 0.66 | 0.97991 |
Target: 5'- gGCGGcGCCGCggCGUCCgcGGCGCGccGCGc -3' miRNA: 3'- aCGUU-CGGUG--GUAGGauUCGUGU--UGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 72966 | 0.66 | 0.97991 |
Target: 5'- cGCGcccGCCGCCGcgggggUCCgcGAGCGCGGCc -3' miRNA: 3'- aCGUu--CGGUGGU------AGGa-UUCGUGUUGc -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 3778 | 0.66 | 0.979679 |
Target: 5'- gGCAGGCCGC-------AGCGCAGCGg -3' miRNA: 3'- aCGUUCGGUGguaggauUCGUGUUGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 55012 | 0.66 | 0.978495 |
Target: 5'- gUGCAcaacgacgcucccguAGCCGCCggCCcc-GCGCAGCu -3' miRNA: 3'- -ACGU---------------UCGGUGGuaGGauuCGUGUUGc -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 79210 | 0.66 | 0.977511 |
Target: 5'- gGCGAuGCCugacACgGUCgaGAGCGCGGCGc -3' miRNA: 3'- aCGUU-CGG----UGgUAGgaUUCGUGUUGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 47289 | 0.66 | 0.977511 |
Target: 5'- cGCGuGCCACUGUgCgagcacGAGCAUGGCGg -3' miRNA: 3'- aCGUuCGGUGGUAgGa-----UUCGUGUUGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 64132 | 0.66 | 0.977511 |
Target: 5'- cGCGcGGCCGCCAgcgcgUCCUGGcccagcccGCGCAucGCGu -3' miRNA: 3'- aCGU-UCGGUGGU-----AGGAUU--------CGUGU--UGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 101964 | 0.66 | 0.977511 |
Target: 5'- gGCAcGGCCGCCAggucgcccUCC-AGGUACGucACGg -3' miRNA: 3'- aCGU-UCGGUGGU--------AGGaUUCGUGU--UGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 30038 | 0.66 | 0.977511 |
Target: 5'- aGCGGGCCGCgG-CCUGccGGcCGCGGCc -3' miRNA: 3'- aCGUUCGGUGgUaGGAU--UC-GUGUUGc -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 74732 | 0.66 | 0.977511 |
Target: 5'- gGCAgcGGCCGCggaCAaCCUGcuGGCGCGGCa -3' miRNA: 3'- aCGU--UCGGUG---GUaGGAU--UCGUGUUGc -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 107935 | 0.66 | 0.977511 |
Target: 5'- cGCGGaucGCCGCCAcguagUCCgu-GCGCGGCc -3' miRNA: 3'- aCGUU---CGGUGGU-----AGGauuCGUGUUGc -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 118193 | 0.66 | 0.97726 |
Target: 5'- cGCGGGCC-CCGcgCCUGccgcgcugcgcggGGCGCuGACGg -3' miRNA: 3'- aCGUUCGGuGGUa-GGAU-------------UCGUG-UUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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