miRNA display CGI


Results 61 - 80 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 31669 0.67 0.974908
Target:  5'- cUGCcuGCgGCUggCCgcGGCGCGGCGg -3'
miRNA:   3'- -ACGuuCGgUGGuaGGauUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 100793 0.67 0.974908
Target:  5'- cGCAGGCCAgCAggUCCcggaaGGGCGCGuGCGc -3'
miRNA:   3'- aCGUUCGGUgGU--AGGa----UUCGUGU-UGC- -5'
23656 5' -51.3 NC_005261.1 + 109854 0.67 0.974908
Target:  5'- uUGguGGCgGC--UCCUGGGgGCAGCGg -3'
miRNA:   3'- -ACguUCGgUGguAGGAUUCgUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 129190 0.67 0.974908
Target:  5'- cGCAGGCCAgCG-CgU-GGCGCAGCu -3'
miRNA:   3'- aCGUUCGGUgGUaGgAuUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 36559 0.67 0.974908
Target:  5'- gGCGAGCCuaGCCGagCUGAGCGgGggcccgccGCGg -3'
miRNA:   3'- aCGUUCGG--UGGUagGAUUCGUgU--------UGC- -5'
23656 5' -51.3 NC_005261.1 + 42229 0.67 0.974908
Target:  5'- cGCGAGCU-CCG-CCgc-GCGCAGCGc -3'
miRNA:   3'- aCGUUCGGuGGUaGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 50022 0.67 0.974908
Target:  5'- cGCGGGCgC-CCAgCCgccGCGCGACGg -3'
miRNA:   3'- aCGUUCG-GuGGUaGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 87032 0.67 0.974908
Target:  5'- cGCGcGCCACCGcgUCC-AGGCugcgcacacGCAGCGc -3'
miRNA:   3'- aCGUuCGGUGGU--AGGaUUCG---------UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 101004 0.67 0.974908
Target:  5'- cGCcAGCCGCgCGUCC--AGCGCGccugugaacGCGg -3'
miRNA:   3'- aCGuUCGGUG-GUAGGauUCGUGU---------UGC- -5'
23656 5' -51.3 NC_005261.1 + 131749 0.67 0.974908
Target:  5'- cGCGgacGGCaCGCCggCC--GGCGCGGCGg -3'
miRNA:   3'- aCGU---UCG-GUGGuaGGauUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 78549 0.67 0.974908
Target:  5'- gGgGAGCCGCgAUCCgcucGCGCGcCGg -3'
miRNA:   3'- aCgUUCGGUGgUAGGauu-CGUGUuGC- -5'
23656 5' -51.3 NC_005261.1 + 87777 0.67 0.974086
Target:  5'- cGCGagGGUCACCGUCUUGgccgccgcguccauGGC-CGGCGg -3'
miRNA:   3'- aCGU--UCGGUGGUAGGAU--------------UCGuGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 43390 0.67 0.972092
Target:  5'- cGCGGuGCCggcACCGUCC-AGGCGCcgggGGCGg -3'
miRNA:   3'- aCGUU-CGG---UGGUAGGaUUCGUG----UUGC- -5'
23656 5' -51.3 NC_005261.1 + 119692 0.67 0.972092
Target:  5'- gGCAGGUC-CCGcUCCac-GCGCGGCGa -3'
miRNA:   3'- aCGUUCGGuGGU-AGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 102973 0.67 0.972092
Target:  5'- cGCGGGCUccGCCG-CCgc-GCGCGACa -3'
miRNA:   3'- aCGUUCGG--UGGUaGGauuCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 100058 0.67 0.972092
Target:  5'- aGCGcGCCGCCG-CCgcccggGGGCGCGccGCGc -3'
miRNA:   3'- aCGUuCGGUGGUaGGa-----UUCGUGU--UGC- -5'
23656 5' -51.3 NC_005261.1 + 63086 0.67 0.972092
Target:  5'- gGCGGGUaCGCC-UCCUggaaGAGCGCGcACGg -3'
miRNA:   3'- aCGUUCG-GUGGuAGGA----UUCGUGU-UGC- -5'
23656 5' -51.3 NC_005261.1 + 57674 0.67 0.972092
Target:  5'- cGCGAG-CGCCAgCCggcgGGGCACAGgGc -3'
miRNA:   3'- aCGUUCgGUGGUaGGa---UUCGUGUUgC- -5'
23656 5' -51.3 NC_005261.1 + 57334 0.67 0.972092
Target:  5'- cUGCcAGCCggcGCCGUUCaccGGCACGACc -3'
miRNA:   3'- -ACGuUCGG---UGGUAGGau-UCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 59936 0.67 0.972092
Target:  5'- cGUcGGCCAUCuccagCCgcAGCGCGGCGc -3'
miRNA:   3'- aCGuUCGGUGGua---GGauUCGUGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.