miRNA display CGI


Results 81 - 100 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 110721 0.67 0.971798
Target:  5'- aGCAAGCUcaacgaaACCA-CCUucGC-CAGCGg -3'
miRNA:   3'- aCGUUCGG-------UGGUaGGAuuCGuGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 15598 0.67 0.969055
Target:  5'- aGC-AGUCGCCGUCgacgagguAGCGCAGCa -3'
miRNA:   3'- aCGuUCGGUGGUAGgau-----UCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 51986 0.67 0.969055
Target:  5'- cGCGGcGCCGCCG-CCgacuucGAGgACGACGa -3'
miRNA:   3'- aCGUU-CGGUGGUaGGa-----UUCgUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 66654 0.67 0.969055
Target:  5'- cGUcGGCCGCC-UCCUccgcGAGCAgcccCAGCGc -3'
miRNA:   3'- aCGuUCGGUGGuAGGA----UUCGU----GUUGC- -5'
23656 5' -51.3 NC_005261.1 + 79141 0.67 0.965789
Target:  5'- gGC-GGCCACCAgcCCggcGAGCACcAGCa -3'
miRNA:   3'- aCGuUCGGUGGUa-GGa--UUCGUG-UUGc -5'
23656 5' -51.3 NC_005261.1 + 23171 0.67 0.965789
Target:  5'- gGCAGGCgCGCCGg---GGGCgACAGCGa -3'
miRNA:   3'- aCGUUCG-GUGGUaggaUUCG-UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 43860 0.67 0.965789
Target:  5'- cGC-GGCCGCguCGUCCUcggcGGCGCGGCu -3'
miRNA:   3'- aCGuUCGGUG--GUAGGAu---UCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 86749 0.67 0.965789
Target:  5'- cUGCAucaucGGCCAgUCGUCC-AGGCACGugACGu -3'
miRNA:   3'- -ACGU-----UCGGU-GGUAGGaUUCGUGU--UGC- -5'
23656 5' -51.3 NC_005261.1 + 110015 0.67 0.965789
Target:  5'- cGCcggcGCCGCCGUCCUuucgccuGGCggGCAGCc -3'
miRNA:   3'- aCGuu--CGGUGGUAGGAu------UCG--UGUUGc -5'
23656 5' -51.3 NC_005261.1 + 59763 0.67 0.965789
Target:  5'- gGCAGGCCuCCAUgugcucggCCgcAGCgACGGCGg -3'
miRNA:   3'- aCGUUCGGuGGUA--------GGauUCG-UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 84553 0.67 0.965789
Target:  5'- cGCGGGcCCAgCG-CCUgGAGCACGGCc -3'
miRNA:   3'- aCGUUC-GGUgGUaGGA-UUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 131672 0.67 0.965789
Target:  5'- cUGCGAggguGCgACCGcCCUGcGCGCGGCGc -3'
miRNA:   3'- -ACGUU----CGgUGGUaGGAUuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 48004 0.67 0.96545
Target:  5'- cGCA-GCCGCCGUcgccccgCCggcaGAGCAgGGCGa -3'
miRNA:   3'- aCGUuCGGUGGUA-------GGa---UUCGUgUUGC- -5'
23656 5' -51.3 NC_005261.1 + 25791 0.67 0.963718
Target:  5'- gGCGAGCaggauggagcucaggCGCCAUCUgguGGCGCcGCGc -3'
miRNA:   3'- aCGUUCG---------------GUGGUAGGau-UCGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 85544 0.67 0.962289
Target:  5'- cGCGGGCgGcuCCGUCUgcGGCGCcGCGa -3'
miRNA:   3'- aCGUUCGgU--GGUAGGauUCGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 86921 0.67 0.962289
Target:  5'- cGCGuccaccGCCGCCG-CCgc-GCGCGGCGg -3'
miRNA:   3'- aCGUu-----CGGUGGUaGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 62437 0.67 0.962289
Target:  5'- cGCGAGCCggucGCCGggCCccAGCAgCGGCGg -3'
miRNA:   3'- aCGUUCGG----UGGUa-GGauUCGU-GUUGC- -5'
23656 5' -51.3 NC_005261.1 + 28884 0.67 0.962289
Target:  5'- cGCGGacGCCGCCG-CCUGcGCcCAACGc -3'
miRNA:   3'- aCGUU--CGGUGGUaGGAUuCGuGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 34071 0.67 0.962289
Target:  5'- cUGCcuGGCCugCAUCCgccgcuGGCugGAgGg -3'
miRNA:   3'- -ACGu-UCGGugGUAGGau----UCGugUUgC- -5'
23656 5' -51.3 NC_005261.1 + 103903 0.67 0.962289
Target:  5'- aGcCGGGCCACCcgcgCCgccaggucGGGCGCGGCGu -3'
miRNA:   3'- aC-GUUCGGUGGua--GGa-------UUCGUGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.