miRNA display CGI


Results 101 - 120 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 39444 0.67 0.962289
Target:  5'- cGCAgGGCC-CCGagCCUccGCGCGGCGc -3'
miRNA:   3'- aCGU-UCGGuGGUa-GGAuuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 86921 0.67 0.962289
Target:  5'- cGCGuccaccGCCGCCG-CCgc-GCGCGGCGg -3'
miRNA:   3'- aCGUu-----CGGUGGUaGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 85544 0.67 0.962289
Target:  5'- cGCGGGCgGcuCCGUCUgcGGCGCcGCGa -3'
miRNA:   3'- aCGUUCGgU--GGUAGGauUCGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 97798 0.67 0.961926
Target:  5'- gGCcGGCgACCGUCCgccGGCGCccccgcaGACGg -3'
miRNA:   3'- aCGuUCGgUGGUAGGau-UCGUG-------UUGC- -5'
23656 5' -51.3 NC_005261.1 + 118810 0.68 0.958547
Target:  5'- cGUggGCguCugCGcCCUGGGCGCGGCa -3'
miRNA:   3'- aCGuuCG--GugGUaGGAUUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 89655 0.68 0.958547
Target:  5'- cGCGGGCCagaACCGcuUCCagAAGCAgAGCa -3'
miRNA:   3'- aCGUUCGG---UGGU--AGGa-UUCGUgUUGc -5'
23656 5' -51.3 NC_005261.1 + 66469 0.68 0.958547
Target:  5'- cGCcAGgCGCgCGUCCUcgcGGUACAGCGa -3'
miRNA:   3'- aCGuUCgGUG-GUAGGAu--UCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 44027 0.68 0.958547
Target:  5'- gGCGGGCgGCCG-CC---GCGCGGCGg -3'
miRNA:   3'- aCGUUCGgUGGUaGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 110418 0.68 0.958547
Target:  5'- cUGCAGGCCAUgAUCCgcuGC-CAcGCGu -3'
miRNA:   3'- -ACGUUCGGUGgUAGGauuCGuGU-UGC- -5'
23656 5' -51.3 NC_005261.1 + 131979 0.68 0.954557
Target:  5'- cGCGcGGCCACCAggCCUucGCagucgcggACGGCGa -3'
miRNA:   3'- aCGU-UCGGUGGUa-GGAuuCG--------UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 121826 0.68 0.954557
Target:  5'- cUGCGGGCCGCCG-CggcGGCGCAcCGg -3'
miRNA:   3'- -ACGUUCGGUGGUaGgauUCGUGUuGC- -5'
23656 5' -51.3 NC_005261.1 + 71161 0.68 0.954557
Target:  5'- gGCAGGCUcugggaugaACgCGUCC-GGGCGCAGCu -3'
miRNA:   3'- aCGUUCGG---------UG-GUAGGaUUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 38254 0.68 0.954557
Target:  5'- gGCucGCaCGCCAgCCUGGGCugGggGCGg -3'
miRNA:   3'- aCGuuCG-GUGGUaGGAUUCGugU--UGC- -5'
23656 5' -51.3 NC_005261.1 + 2284 0.68 0.954557
Target:  5'- gGCGGcGCCGCCAgcgCCUccccGgGCAGCGg -3'
miRNA:   3'- aCGUU-CGGUGGUa--GGAuu--CgUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 117060 0.68 0.954557
Target:  5'- cGCAGGCCAgCCuggUUAAGCACGAg- -3'
miRNA:   3'- aCGUUCGGU-GGuagGAUUCGUGUUgc -5'
23656 5' -51.3 NC_005261.1 + 19726 0.68 0.954557
Target:  5'- gGCcgAGGCC-CCgAUCUUGAGCACcACGc -3'
miRNA:   3'- aCG--UUCGGuGG-UAGGAUUCGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 93890 0.68 0.954557
Target:  5'- aGCAgcgcGGUCGCCAgcgaCUGcgGGCGCGGCGc -3'
miRNA:   3'- aCGU----UCGGUGGUag--GAU--UCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 62616 0.68 0.951615
Target:  5'- gGUAGGCgGCCAUCagcgccagcguguccGGCGCGACGc -3'
miRNA:   3'- aCGUUCGgUGGUAGgau------------UCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 35035 0.68 0.950316
Target:  5'- cGCuGGCgCGCCGcCCUAAcggcggccGCGCGGCGg -3'
miRNA:   3'- aCGuUCG-GUGGUaGGAUU--------CGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 102935 0.68 0.950316
Target:  5'- cGCAGcGCCGCCG-CCgcuGCgGCGGCGg -3'
miRNA:   3'- aCGUU-CGGUGGUaGGauuCG-UGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.