Results 121 - 140 of 222 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 4023 | 0.68 | 0.950316 |
Target: 5'- cGCAGGCCGCCA-CgUGcggcAGCgcccACAGCGc -3' miRNA: 3'- aCGUUCGGUGGUaGgAU----UCG----UGUUGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 46478 | 0.68 | 0.950316 |
Target: 5'- cGCAGGUgcagcucggCGCCcUCCgcgGGGCGCAGCc -3' miRNA: 3'- aCGUUCG---------GUGGuAGGa--UUCGUGUUGc -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 35035 | 0.68 | 0.950316 |
Target: 5'- cGCuGGCgCGCCGcCCUAAcggcggccGCGCGGCGg -3' miRNA: 3'- aCGuUCG-GUGGUaGGAUU--------CGUGUUGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 99869 | 0.68 | 0.945819 |
Target: 5'- cGCGcGCCGCCG-CCgcucGGCGCGAgGg -3' miRNA: 3'- aCGUuCGGUGGUaGGau--UCGUGUUgC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 7885 | 0.68 | 0.945819 |
Target: 5'- aGCGAGCgGCUcuguUCC--GGCGCGGCGc -3' miRNA: 3'- aCGUUCGgUGGu---AGGauUCGUGUUGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 28596 | 0.68 | 0.945819 |
Target: 5'- gGCGGGCCGCCcgCgCcGAGCugG-CGg -3' miRNA: 3'- aCGUUCGGUGGuaG-GaUUCGugUuGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 33382 | 0.68 | 0.945819 |
Target: 5'- cUGCGGGCCGCCGcagCCgccGcCGCAGCc -3' miRNA: 3'- -ACGUUCGGUGGUa--GGauuC-GUGUUGc -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 47664 | 0.68 | 0.945819 |
Target: 5'- gGCcAGCCGCagcgCC-GAGCGCAGCa -3' miRNA: 3'- aCGuUCGGUGgua-GGaUUCGUGUUGc -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 54811 | 0.68 | 0.945819 |
Target: 5'- cGUAGGCCACCAggUCCgcgucauacgcGGGCAgGGCu -3' miRNA: 3'- aCGUUCGGUGGU--AGGa----------UUCGUgUUGc -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 124757 | 0.68 | 0.945819 |
Target: 5'- cGCAgcGGCCGCC-UCC-AGGCugAggaGCGg -3' miRNA: 3'- aCGU--UCGGUGGuAGGaUUCGugU---UGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 124657 | 0.68 | 0.941062 |
Target: 5'- cGCAcccGGCCcuCCAaaaUCCUGGGCAgCGGCa -3' miRNA: 3'- aCGU---UCGGu-GGU---AGGAUUCGU-GUUGc -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 1488 | 0.68 | 0.941062 |
Target: 5'- cGCAgaaGGCCACCG-CCgcGGCcgGCAGCu -3' miRNA: 3'- aCGU---UCGGUGGUaGGauUCG--UGUUGc -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 90668 | 0.68 | 0.941062 |
Target: 5'- cGC-GGCCACCGUgacgaCCaucGGGCGCGACa -3' miRNA: 3'- aCGuUCGGUGGUA-----GGa--UUCGUGUUGc -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 96744 | 0.68 | 0.941062 |
Target: 5'- nGCGAGUC-CCggCCUGGGcCGCGGCc -3' miRNA: 3'- aCGUUCGGuGGuaGGAUUC-GUGUUGc -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 42193 | 0.68 | 0.941062 |
Target: 5'- cGCGAGCCGC--UCCacGGCGCcGCGc -3' miRNA: 3'- aCGUUCGGUGguAGGauUCGUGuUGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 92340 | 0.68 | 0.941062 |
Target: 5'- cGCGGGCCACCgGUCac-GGUGCAGgCGg -3' miRNA: 3'- aCGUUCGGUGG-UAGgauUCGUGUU-GC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 103593 | 0.69 | 0.936043 |
Target: 5'- cGCucGCCGCCGUggCCgcGGCgGCAGCGc -3' miRNA: 3'- aCGuuCGGUGGUA--GGauUCG-UGUUGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 38292 | 0.69 | 0.936043 |
Target: 5'- cGCGGuGCUgGCCcgCCUGAGCGCGcaggGCGg -3' miRNA: 3'- aCGUU-CGG-UGGuaGGAUUCGUGU----UGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 21790 | 0.69 | 0.936043 |
Target: 5'- cGCGGGCCGCCGcagCCgccGGCcgggccgggcccGCGGCGg -3' miRNA: 3'- aCGUUCGGUGGUa--GGau-UCG------------UGUUGC- -5' |
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23656 | 5' | -51.3 | NC_005261.1 | + | 97931 | 0.69 | 0.936043 |
Target: 5'- cUGUAcuGGCCGCCAgcUCC--GGCgGCAACGa -3' miRNA: 3'- -ACGU--UCGGUGGU--AGGauUCG-UGUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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