miRNA display CGI


Results 21 - 40 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 21790 0.69 0.936043
Target:  5'- cGCGGGCCGCCGcagCCgccGGCcgggccgggcccGCGGCGg -3'
miRNA:   3'- aCGUUCGGUGGUa--GGau-UCG------------UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 23171 0.67 0.965789
Target:  5'- gGCAGGCgCGCCGg---GGGCgACAGCGa -3'
miRNA:   3'- aCGUUCG-GUGGUaggaUUCG-UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 23273 0.69 0.935527
Target:  5'- aGCAGcGCCucccagcACgCGUCCgUGGGCACAGCa -3'
miRNA:   3'- aCGUU-CGG-------UG-GUAGG-AUUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 23608 0.71 0.838725
Target:  5'- gGCugucGCCGCCGcugCCgGGGCGCGGCGg -3'
miRNA:   3'- aCGuu--CGGUGGUa--GGaUUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 25791 0.67 0.963718
Target:  5'- gGCGAGCaggauggagcucaggCGCCAUCUgguGGCGCcGCGc -3'
miRNA:   3'- aCGUUCG---------------GUGGUAGGau-UCGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 28596 0.68 0.945819
Target:  5'- gGCGGGCCGCCcgCgCcGAGCugG-CGg -3'
miRNA:   3'- aCGUUCGGUGGuaG-GaUUCGugUuGC- -5'
23656 5' -51.3 NC_005261.1 + 28884 0.67 0.962289
Target:  5'- cGCGGacGCCGCCG-CCUGcGCcCAACGc -3'
miRNA:   3'- aCGUU--CGGUGGUaGGAUuCGuGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 29232 0.66 0.985968
Target:  5'- cGCAGGCUACg--CCgcggcgccGCGCGACGg -3'
miRNA:   3'- aCGUUCGGUGguaGGauu-----CGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 29882 0.66 0.982113
Target:  5'- cGCu-GCCGCCAgcgCCcGGGCccgcgGCAGCGc -3'
miRNA:   3'- aCGuuCGGUGGUa--GGaUUCG-----UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 30038 0.66 0.977511
Target:  5'- aGCGGGCCGCgG-CCUGccGGcCGCGGCc -3'
miRNA:   3'- aCGUUCGGUGgUaGGAU--UC-GUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 31038 0.76 0.594822
Target:  5'- gGCGcGCCGCCggGUCCccAGCGCGGCGg -3'
miRNA:   3'- aCGUuCGGUGG--UAGGauUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 31321 0.66 0.984129
Target:  5'- cGCGGGCgCGCUcgCCgccAGCGCGccgcuGCGg -3'
miRNA:   3'- aCGUUCG-GUGGuaGGau-UCGUGU-----UGC- -5'
23656 5' -51.3 NC_005261.1 + 31669 0.67 0.974908
Target:  5'- cUGCcuGCgGCUggCCgcGGCGCGGCGg -3'
miRNA:   3'- -ACGuuCGgUGGuaGGauUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 32429 0.69 0.925213
Target:  5'- cGgGAGCCccGCCggCCUGGGCGcCGGCa -3'
miRNA:   3'- aCgUUCGG--UGGuaGGAUUCGU-GUUGc -5'
23656 5' -51.3 NC_005261.1 + 33382 0.68 0.945819
Target:  5'- cUGCGGGCCGCCGcagCCgccGcCGCAGCc -3'
miRNA:   3'- -ACGUUCGGUGGUa--GGauuC-GUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 34071 0.67 0.962289
Target:  5'- cUGCcuGGCCugCAUCCgccgcuGGCugGAgGg -3'
miRNA:   3'- -ACGu-UCGGugGUAGGau----UCGugUUgC- -5'
23656 5' -51.3 NC_005261.1 + 35035 0.68 0.950316
Target:  5'- cGCuGGCgCGCCGcCCUAAcggcggccGCGCGGCGg -3'
miRNA:   3'- aCGuUCG-GUGGUaGGAUU--------CGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 36559 0.67 0.974908
Target:  5'- gGCGAGCCuaGCCGagCUGAGCGgGggcccgccGCGg -3'
miRNA:   3'- aCGUUCGG--UGGUagGAUUCGUgU--------UGC- -5'
23656 5' -51.3 NC_005261.1 + 37169 0.66 0.97991
Target:  5'- cGCGcGCUugCG-CCUGGGCGCugcuGGCGg -3'
miRNA:   3'- aCGUuCGGugGUaGGAUUCGUG----UUGC- -5'
23656 5' -51.3 NC_005261.1 + 38174 0.71 0.847239
Target:  5'- aGCAcGGCUGCCuggaggCCUGGGCGCGccGCGg -3'
miRNA:   3'- aCGU-UCGGUGGua----GGAUUCGUGU--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.