miRNA display CGI


Results 41 - 60 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 38254 0.68 0.954557
Target:  5'- gGCucGCaCGCCAgCCUGGGCugGggGCGg -3'
miRNA:   3'- aCGuuCG-GUGGUaGGAUUCGugU--UGC- -5'
23656 5' -51.3 NC_005261.1 + 38292 0.69 0.936043
Target:  5'- cGCGGuGCUgGCCcgCCUGAGCGCGcaggGCGg -3'
miRNA:   3'- aCGUU-CGG-UGGuaGGAUUCGUGU----UGC- -5'
23656 5' -51.3 NC_005261.1 + 39214 0.66 0.97991
Target:  5'- cGguAGCCGCCAUggcCCUcgcGCGCGccgGCGa -3'
miRNA:   3'- aCguUCGGUGGUA---GGAuu-CGUGU---UGC- -5'
23656 5' -51.3 NC_005261.1 + 39444 0.67 0.962289
Target:  5'- cGCAgGGCC-CCGagCCUccGCGCGGCGc -3'
miRNA:   3'- aCGU-UCGGuGGUa-GGAuuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 39542 0.69 0.9194
Target:  5'- cGC-GGCCGCCAgccCCgcgcgcGCGCGGCGg -3'
miRNA:   3'- aCGuUCGGUGGUa--GGauu---CGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 42193 0.68 0.941062
Target:  5'- cGCGAGCCGC--UCCacGGCGCcGCGc -3'
miRNA:   3'- aCGUUCGGUGguAGGauUCGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 42229 0.67 0.974908
Target:  5'- cGCGAGCU-CCG-CCgc-GCGCAGCGc -3'
miRNA:   3'- aCGUUCGGuGGUaGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 43063 1.09 0.00638
Target:  5'- gUGCAAGCCACCAUCCUAAGCACAACGc -3'
miRNA:   3'- -ACGUUCGGUGGUAGGAUUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 43390 0.67 0.972092
Target:  5'- cGCGGuGCCggcACCGUCC-AGGCGCcgggGGCGg -3'
miRNA:   3'- aCGUU-CGG---UGGUAGGaUUCGUG----UUGC- -5'
23656 5' -51.3 NC_005261.1 + 43860 0.67 0.965789
Target:  5'- cGC-GGCCGCguCGUCCUcggcGGCGCGGCu -3'
miRNA:   3'- aCGuUCGGUG--GUAGGAu---UCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 44027 0.68 0.958547
Target:  5'- gGCGGGCgGCCG-CC---GCGCGGCGg -3'
miRNA:   3'- aCGUUCGgUGGUaGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 45946 0.66 0.985968
Target:  5'- cGCGagGGCCGCCAgggcgCCguUGAGCAUGcGCGc -3'
miRNA:   3'- aCGU--UCGGUGGUa----GG--AUUCGUGU-UGC- -5'
23656 5' -51.3 NC_005261.1 + 46014 0.66 0.984129
Target:  5'- gGCAGGCgA-UGUCCggGAGCAgGACGg -3'
miRNA:   3'- aCGUUCGgUgGUAGGa-UUCGUgUUGC- -5'
23656 5' -51.3 NC_005261.1 + 46130 0.73 0.773816
Target:  5'- aGCAGGUCGCCGcCCgagaacgccGAGCGCGGCa -3'
miRNA:   3'- aCGUUCGGUGGUaGGa--------UUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 46478 0.68 0.950316
Target:  5'- cGCAGGUgcagcucggCGCCcUCCgcgGGGCGCAGCc -3'
miRNA:   3'- aCGUUCG---------GUGGuAGGa--UUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 46693 0.7 0.871451
Target:  5'- gGC-GGCCGCCAcggcaUUCgcuAGCGCGACGa -3'
miRNA:   3'- aCGuUCGGUGGU-----AGGau-UCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 47097 0.69 0.9194
Target:  5'- gGCGGGCCAgagcCCGUCCgUGAGgACGugcGCGu -3'
miRNA:   3'- aCGUUCGGU----GGUAGG-AUUCgUGU---UGC- -5'
23656 5' -51.3 NC_005261.1 + 47289 0.66 0.977511
Target:  5'- cGCGuGCCACUGUgCgagcacGAGCAUGGCGg -3'
miRNA:   3'- aCGUuCGGUGGUAgGa-----UUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 47664 0.68 0.945819
Target:  5'- gGCcAGCCGCagcgCC-GAGCGCAGCa -3'
miRNA:   3'- aCGuUCGGUGgua-GGaUUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 48004 0.67 0.96545
Target:  5'- cGCA-GCCGCCGUcgccccgCCggcaGAGCAgGGCGa -3'
miRNA:   3'- aCGUuCGGUGGUA-------GGa---UUCGUgUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.