miRNA display CGI


Results 61 - 80 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 48695 0.69 0.906984
Target:  5'- cGCGGGCCAUCAcgCCggcGGGCgugauguuGCAACGg -3'
miRNA:   3'- aCGUUCGGUGGUa-GGa--UUCG--------UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 49044 0.69 0.906984
Target:  5'- cGCAGGCaGCCG-CC-GAGCACGGCc -3'
miRNA:   3'- aCGUUCGgUGGUaGGaUUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 49091 0.71 0.866774
Target:  5'- cGCGGGcCCGCUGagcgcgcgcagcagcUCCUcGAGCGCGGCGg -3'
miRNA:   3'- aCGUUC-GGUGGU---------------AGGA-UUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 49533 0.73 0.733419
Target:  5'- gGCcAGCCGCCGUCCgcGGcCACcACGu -3'
miRNA:   3'- aCGuUCGGUGGUAGGauUC-GUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 49800 0.69 0.913324
Target:  5'- cGCGAgacGUCGCCcUCCgcgGGGCGCGugGa -3'
miRNA:   3'- aCGUU---CGGUGGuAGGa--UUCGUGUugC- -5'
23656 5' -51.3 NC_005261.1 + 50022 0.67 0.974908
Target:  5'- cGCGGGCgC-CCAgCCgccGCGCGACGg -3'
miRNA:   3'- aCGUUCG-GuGGUaGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 51986 0.67 0.969055
Target:  5'- cGCGGcGCCGCCG-CCgacuucGAGgACGACGa -3'
miRNA:   3'- aCGUU-CGGUGGUaGGa-----UUCgUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 52350 0.69 0.925213
Target:  5'- cGCGcuGCCGCCGgagCCgGAGCccGCGGCGg -3'
miRNA:   3'- aCGUu-CGGUGGUa--GGaUUCG--UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 54811 0.68 0.945819
Target:  5'- cGUAGGCCACCAggUCCgcgucauacgcGGGCAgGGCu -3'
miRNA:   3'- aCGUUCGGUGGU--AGGa----------UUCGUgUUGc -5'
23656 5' -51.3 NC_005261.1 + 55012 0.66 0.978495
Target:  5'- gUGCAcaacgacgcucccguAGCCGCCggCCcc-GCGCAGCu -3'
miRNA:   3'- -ACGU---------------UCGGUGGuaGGauuCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 55925 0.69 0.913324
Target:  5'- cGC-AGCCGCCG-CCggcGCGCAGCc -3'
miRNA:   3'- aCGuUCGGUGGUaGGauuCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 56809 0.74 0.702061
Target:  5'- aGCGGGCCACgGuguUCCUGgugccgcggcGGCACGGCa -3'
miRNA:   3'- aCGUUCGGUGgU---AGGAU----------UCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 57254 0.66 0.983936
Target:  5'- cGCGuGCCGCCGcacacgcUCCgcaucGCGCGGCa -3'
miRNA:   3'- aCGUuCGGUGGU-------AGGauu--CGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 57334 0.67 0.972092
Target:  5'- cUGCcAGCCggcGCCGUUCaccGGCACGACc -3'
miRNA:   3'- -ACGuUCGG---UGGUAGGau-UCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 57516 0.69 0.925213
Target:  5'- gGCGGGCCuuCuUCCacAGGCACGGCGc -3'
miRNA:   3'- aCGUUCGGugGuAGGa-UUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 57674 0.67 0.972092
Target:  5'- cGCGAG-CGCCAgCCggcgGGGCACAGgGc -3'
miRNA:   3'- aCGUUCgGUGGUaGGa---UUCGUGUUgC- -5'
23656 5' -51.3 NC_005261.1 + 59594 0.77 0.520954
Target:  5'- cGCGccGCCACCAccUCCgcGGCGCGGCGg -3'
miRNA:   3'- aCGUu-CGGUGGU--AGGauUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 59763 0.67 0.965789
Target:  5'- gGCAGGCCuCCAUgugcucggCCgcAGCgACGGCGg -3'
miRNA:   3'- aCGUUCGGuGGUA--------GGauUCG-UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 59936 0.67 0.972092
Target:  5'- cGUcGGCCAUCuccagCCgcAGCGCGGCGc -3'
miRNA:   3'- aCGuUCGGUGGua---GGauUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 59982 0.66 0.983344
Target:  5'- --gAAGgCGCCGUCCgcacccucgggcAGCGCGACGg -3'
miRNA:   3'- acgUUCgGUGGUAGGau----------UCGUGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.