miRNA display CGI


Results 81 - 100 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 62042 0.66 0.985968
Target:  5'- cGCGgcucGGCCGgC-UCC-AGGCGCAGCa -3'
miRNA:   3'- aCGU----UCGGUgGuAGGaUUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 62361 0.66 0.97991
Target:  5'- cGCGcGCCACCAgcucgcgcgCCUGcGGCAgCGGCa -3'
miRNA:   3'- aCGUuCGGUGGUa--------GGAU-UCGU-GUUGc -5'
23656 5' -51.3 NC_005261.1 + 62437 0.67 0.962289
Target:  5'- cGCGAGCCggucGCCGggCCccAGCAgCGGCGg -3'
miRNA:   3'- aCGUUCGG----UGGUa-GGauUCGU-GUUGC- -5'
23656 5' -51.3 NC_005261.1 + 62616 0.68 0.951615
Target:  5'- gGUAGGCgGCCAUCagcgccagcguguccGGCGCGACGc -3'
miRNA:   3'- aCGUUCGgUGGUAGgau------------UCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 63059 0.7 0.879055
Target:  5'- aGCAGcGCCG-CGUCgCUGGcGCACAGCGg -3'
miRNA:   3'- aCGUU-CGGUgGUAG-GAUU-CGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 63086 0.67 0.972092
Target:  5'- gGCGGGUaCGCC-UCCUggaaGAGCGCGcACGg -3'
miRNA:   3'- aCGUUCG-GUGGuAGGA----UUCGUGU-UGC- -5'
23656 5' -51.3 NC_005261.1 + 63444 0.66 0.984129
Target:  5'- cGUAGGCCgcGCCcgCC-GAGCGCccGCGa -3'
miRNA:   3'- aCGUUCGG--UGGuaGGaUUCGUGu-UGC- -5'
23656 5' -51.3 NC_005261.1 + 64132 0.66 0.977511
Target:  5'- cGCGcGGCCGCCAgcgcgUCCUGGcccagcccGCGCAucGCGu -3'
miRNA:   3'- aCGU-UCGGUGGU-----AGGAUU--------CGUGU--UGC- -5'
23656 5' -51.3 NC_005261.1 + 64466 0.7 0.893526
Target:  5'- aGUuGGCCACCAgguucgCC-GGGUGCAGCGg -3'
miRNA:   3'- aCGuUCGGUGGUa-----GGaUUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 66091 0.69 0.93076
Target:  5'- aUGCGcGGCCACguCAUCCagcccGCGCAGCGc -3'
miRNA:   3'- -ACGU-UCGGUG--GUAGGauu--CGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 66469 0.68 0.958547
Target:  5'- cGCcAGgCGCgCGUCCUcgcGGUACAGCGa -3'
miRNA:   3'- aCGuUCgGUG-GUAGGAu--UCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 66654 0.67 0.969055
Target:  5'- cGUcGGCCGCC-UCCUccgcGAGCAgcccCAGCGc -3'
miRNA:   3'- aCGuUCGGUGGuAGGA----UUCGU----GUUGC- -5'
23656 5' -51.3 NC_005261.1 + 66857 0.66 0.983543
Target:  5'- gUGCAcacGCCGCCAccgagagcccaagcUCCaggAAGCGCAccaGCGu -3'
miRNA:   3'- -ACGUu--CGGUGGU--------------AGGa--UUCGUGU---UGC- -5'
23656 5' -51.3 NC_005261.1 + 67651 0.8 0.369099
Target:  5'- cGCGGGCCGcCCGUCCgc-GCGCGGCGc -3'
miRNA:   3'- aCGUUCGGU-GGUAGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 69275 0.69 0.913324
Target:  5'- gGCGAGCCGCCcgcgCCgaccccGGCGCGggGCGc -3'
miRNA:   3'- aCGUUCGGUGGua--GGau----UCGUGU--UGC- -5'
23656 5' -51.3 NC_005261.1 + 70673 0.69 0.935527
Target:  5'- cGCGGGCCGCaccuccagccaggCGUCC--AGCGCGGCc -3'
miRNA:   3'- aCGUUCGGUG-------------GUAGGauUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 71058 0.66 0.985968
Target:  5'- cGUggGCCAgCcgCC---GCGCGGCGg -3'
miRNA:   3'- aCGuuCGGUgGuaGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 71161 0.68 0.954557
Target:  5'- gGCAGGCUcugggaugaACgCGUCC-GGGCGCAGCu -3'
miRNA:   3'- aCGUUCGG---------UG-GUAGGaUUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 71447 0.66 0.97991
Target:  5'- cGCGcAGCCGCCGccUCCcgGAGCAuCAGg- -3'
miRNA:   3'- aCGU-UCGGUGGU--AGGa-UUCGU-GUUgc -5'
23656 5' -51.3 NC_005261.1 + 72477 0.66 0.97991
Target:  5'- cGCGAGCgCgGCCAgcgCCagGAGCGCcGCGc -3'
miRNA:   3'- aCGUUCG-G-UGGUa--GGa-UUCGUGuUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.