miRNA display CGI


Results 101 - 120 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 72755 0.74 0.712593
Target:  5'- gGCGGGCCGCaugCCc-AGCACGGCGg -3'
miRNA:   3'- aCGUUCGGUGguaGGauUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 72966 0.66 0.97991
Target:  5'- cGCGcccGCCGCCGcgggggUCCgcGAGCGCGGCc -3'
miRNA:   3'- aCGUu--CGGUGGU------AGGa-UUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 73779 0.66 0.985968
Target:  5'- cGCuGGCCugCGaCgUGcGCGCGGCGg -3'
miRNA:   3'- aCGuUCGGugGUaGgAUuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 74732 0.66 0.977511
Target:  5'- gGCAgcGGCCGCggaCAaCCUGcuGGCGCGGCa -3'
miRNA:   3'- aCGU--UCGGUG---GUaGGAU--UCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 75306 0.66 0.982113
Target:  5'- cGCAccgcGCCACCGUCggcGGCGCG-CGg -3'
miRNA:   3'- aCGUu---CGGUGGUAGgauUCGUGUuGC- -5'
23656 5' -51.3 NC_005261.1 + 75551 0.69 0.9194
Target:  5'- cGCGuccuGCCgGCCAUCCccgGGGCGCugGGCGg -3'
miRNA:   3'- aCGUu---CGG-UGGUAGGa--UUCGUG--UUGC- -5'
23656 5' -51.3 NC_005261.1 + 77010 0.66 0.985968
Target:  5'- cGCGcGCCGCCcUCCUc-GC-CGACGc -3'
miRNA:   3'- aCGUuCGGUGGuAGGAuuCGuGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 78549 0.67 0.974908
Target:  5'- gGgGAGCCGCgAUCCgcucGCGCGcCGg -3'
miRNA:   3'- aCgUUCGGUGgUAGGauu-CGUGUuGC- -5'
23656 5' -51.3 NC_005261.1 + 79141 0.67 0.965789
Target:  5'- gGC-GGCCACCAgcCCggcGAGCACcAGCa -3'
miRNA:   3'- aCGuUCGGUGGUa-GGa--UUCGUG-UUGc -5'
23656 5' -51.3 NC_005261.1 + 79210 0.66 0.977511
Target:  5'- gGCGAuGCCugacACgGUCgaGAGCGCGGCGc -3'
miRNA:   3'- aCGUU-CGG----UGgUAGgaUUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 80186 0.66 0.97991
Target:  5'- aGCGuGCCAgC-UCCUGcaGGUACAGCu -3'
miRNA:   3'- aCGUuCGGUgGuAGGAU--UCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 81212 0.67 0.962289
Target:  5'- cGCGAGCCggACCAccguggcgCCcGAGgGCGGCGg -3'
miRNA:   3'- aCGUUCGG--UGGUa-------GGaUUCgUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 81261 0.69 0.93076
Target:  5'- cGCGaguucuccccGGCCGCCugcgcgagCCgGAGCGCGGCGc -3'
miRNA:   3'- aCGU----------UCGGUGGua------GGaUUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 81940 0.69 0.93076
Target:  5'- aGCAGGCC-CaCGUUCUccacgcuaAAGUACAGCGc -3'
miRNA:   3'- aCGUUCGGuG-GUAGGA--------UUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 82617 0.66 0.985968
Target:  5'- cGUGAGCCGCCGgaUCagcgAGGC-CGACa -3'
miRNA:   3'- aCGUUCGGUGGU--AGga--UUCGuGUUGc -5'
23656 5' -51.3 NC_005261.1 + 83844 0.66 0.985968
Target:  5'- gGCGGGCCGCgGcCCcgcUGGGCugGGCc -3'
miRNA:   3'- aCGUUCGGUGgUaGG---AUUCGugUUGc -5'
23656 5' -51.3 NC_005261.1 + 84553 0.67 0.965789
Target:  5'- cGCGGGcCCAgCG-CCUgGAGCACGGCc -3'
miRNA:   3'- aCGUUC-GGUgGUaGGA-UUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 84857 0.66 0.985968
Target:  5'- cGCGGGCCgcgugGCCAUgaCC-GAGCGC-ACGa -3'
miRNA:   3'- aCGUUCGG-----UGGUA--GGaUUCGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 85544 0.67 0.962289
Target:  5'- cGCGGGCgGcuCCGUCUgcGGCGCcGCGa -3'
miRNA:   3'- aCGUUCGgU--GGUAGGauUCGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 86510 0.66 0.97991
Target:  5'- gGCAggGGCuUGCCGUCCUuguCGCAGCGc -3'
miRNA:   3'- aCGU--UCG-GUGGUAGGAuucGUGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.