miRNA display CGI


Results 21 - 40 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 124757 0.68 0.945819
Target:  5'- cGCAgcGGCCGCC-UCC-AGGCugAggaGCGg -3'
miRNA:   3'- aCGU--UCGGUGGuAGGaUUCGugU---UGC- -5'
23656 5' -51.3 NC_005261.1 + 124657 0.68 0.941062
Target:  5'- cGCAcccGGCCcuCCAaaaUCCUGGGCAgCGGCa -3'
miRNA:   3'- aCGU---UCGGu-GGU---AGGAUUCGU-GUUGc -5'
23656 5' -51.3 NC_005261.1 + 123422 0.66 0.985968
Target:  5'- gGCGGGCuCGCCAcgggCCgcAGcCGCAGCu -3'
miRNA:   3'- aCGUUCG-GUGGUa---GGauUC-GUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 123199 0.71 0.847239
Target:  5'- gGCGgacccAGCCGCCG-CgUAAGCGCGGCc -3'
miRNA:   3'- aCGU-----UCGGUGGUaGgAUUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 121826 0.68 0.954557
Target:  5'- cUGCGGGCCGCCG-CggcGGCGCAcCGg -3'
miRNA:   3'- -ACGUUCGGUGGUaGgauUCGUGUuGC- -5'
23656 5' -51.3 NC_005261.1 + 121546 0.76 0.605558
Target:  5'- cUGUcgGAGCCGCCGUCCUcGGCGaagGGCGg -3'
miRNA:   3'- -ACG--UUCGGUGGUAGGAuUCGUg--UUGC- -5'
23656 5' -51.3 NC_005261.1 + 119692 0.67 0.972092
Target:  5'- gGCAGGUC-CCGcUCCac-GCGCGGCGa -3'
miRNA:   3'- aCGUUCGGuGGU-AGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 119122 0.7 0.871451
Target:  5'- aUGUAGGCCGCgG-CCgcGGCGCGGCc -3'
miRNA:   3'- -ACGUUCGGUGgUaGGauUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 118901 0.69 0.932905
Target:  5'- cUGguGGCCugCGUCUggguccggcgccgcGGGCGCGGCGc -3'
miRNA:   3'- -ACguUCGGugGUAGGa-------------UUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 118810 0.68 0.958547
Target:  5'- cGUggGCguCugCGcCCUGGGCGCGGCa -3'
miRNA:   3'- aCGuuCG--GugGUaGGAUUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 118557 0.66 0.985968
Target:  5'- cGCGAGgaCGCCGUgcCCgcgcGCGCGGCGg -3'
miRNA:   3'- aCGUUCg-GUGGUA--GGauu-CGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 118193 0.66 0.97726
Target:  5'- cGCGGGCC-CCGcgCCUGccgcgcugcgcggGGCGCuGACGg -3'
miRNA:   3'- aCGUUCGGuGGUa-GGAU-------------UCGUG-UUGC- -5'
23656 5' -51.3 NC_005261.1 + 117365 0.73 0.743691
Target:  5'- cGCAAgGCCGCCcUCCUGgaGGCGCGcugcuucgGCGg -3'
miRNA:   3'- aCGUU-CGGUGGuAGGAU--UCGUGU--------UGC- -5'
23656 5' -51.3 NC_005261.1 + 117060 0.68 0.954557
Target:  5'- cGCAGGCCAgCCuggUUAAGCACGAg- -3'
miRNA:   3'- aCGUUCGGU-GGuagGAUUCGUGUUgc -5'
23656 5' -51.3 NC_005261.1 + 115996 0.71 0.838725
Target:  5'- cUGaCGAGCCGCCcgaggcggCCUGAGCcgcCGACGg -3'
miRNA:   3'- -AC-GUUCGGUGGua------GGAUUCGu--GUUGC- -5'
23656 5' -51.3 NC_005261.1 + 115919 0.66 0.97991
Target:  5'- cGCcGGCCGCCGcgUCCgc-GCGCGGgGc -3'
miRNA:   3'- aCGuUCGGUGGU--AGGauuCGUGUUgC- -5'
23656 5' -51.3 NC_005261.1 + 113055 0.7 0.893526
Target:  5'- gGCGcGCCACCGcUCgCUGGGCAuCGGCu -3'
miRNA:   3'- aCGUuCGGUGGU-AG-GAUUCGU-GUUGc -5'
23656 5' -51.3 NC_005261.1 + 111416 0.69 0.93076
Target:  5'- gGCGGGCCACacgCCggcGGGCAagaGACGg -3'
miRNA:   3'- aCGUUCGGUGguaGGa--UUCGUg--UUGC- -5'
23656 5' -51.3 NC_005261.1 + 110721 0.67 0.971798
Target:  5'- aGCAAGCUcaacgaaACCA-CCUucGC-CAGCGg -3'
miRNA:   3'- aCGUUCGG-------UGGUaGGAuuCGuGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 110418 0.68 0.958547
Target:  5'- cUGCAGGCCAUgAUCCgcuGC-CAcGCGu -3'
miRNA:   3'- -ACGUUCGGUGgUAGGauuCGuGU-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.