miRNA display CGI


Results 41 - 60 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 110015 0.67 0.965789
Target:  5'- cGCcggcGCCGCCGUCCUuucgccuGGCggGCAGCc -3'
miRNA:   3'- aCGuu--CGGUGGUAGGAu------UCG--UGUUGc -5'
23656 5' -51.3 NC_005261.1 + 109854 0.67 0.974908
Target:  5'- uUGguGGCgGC--UCCUGGGgGCAGCGg -3'
miRNA:   3'- -ACguUCGgUGguAGGAUUCgUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 109348 0.66 0.982113
Target:  5'- gGCGGccgcGUCGCCGUCCagccgcucGAGCGCGGCc -3'
miRNA:   3'- aCGUU----CGGUGGUAGGa-------UUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 108744 0.66 0.97991
Target:  5'- gGCGGcGCCGCggCGUCCgcGGCGCGccGCGc -3'
miRNA:   3'- aCGUU-CGGUG--GUAGGauUCGUGU--UGC- -5'
23656 5' -51.3 NC_005261.1 + 108405 0.71 0.830004
Target:  5'- aGCAGccgcGCCACCGcgCCUGcguGCACGGCa -3'
miRNA:   3'- aCGUU----CGGUGGUa-GGAUu--CGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 107935 0.66 0.977511
Target:  5'- cGCGGaucGCCGCCAcguagUCCgu-GCGCGGCc -3'
miRNA:   3'- aCGUU---CGGUGGU-----AGGauuCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 107535 0.74 0.712593
Target:  5'- cGCGucggcGGCCACCAgcacgUCCgaGAGCACGGCa -3'
miRNA:   3'- aCGU-----UCGGUGGU-----AGGa-UUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 107450 0.66 0.985968
Target:  5'- cGUuGGCCACCG-CCccGGCACcGCa -3'
miRNA:   3'- aCGuUCGGUGGUaGGauUCGUGuUGc -5'
23656 5' -51.3 NC_005261.1 + 106893 0.69 0.93076
Target:  5'- cUGCAGcGCCugCGUCgUccGCGCcGCGg -3'
miRNA:   3'- -ACGUU-CGGugGUAGgAuuCGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 106313 0.7 0.886415
Target:  5'- aGCAGGUCuuCCGUCgUGAGcCACGGCc -3'
miRNA:   3'- aCGUUCGGu-GGUAGgAUUC-GUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 105946 0.71 0.855536
Target:  5'- cGCGAGCgCGCCGUCgaUGgccucggcgcccAGCGCGGCGu -3'
miRNA:   3'- aCGUUCG-GUGGUAGg-AU------------UCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 105130 0.72 0.811971
Target:  5'- cGCGGGCCGCCGgcgcgcgcaggUCCUcgcggcucGAGgGCGGCGu -3'
miRNA:   3'- aCGUUCGGUGGU-----------AGGA--------UUCgUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 104686 0.66 0.984129
Target:  5'- aGCGccugGGCCACCGccCCgaagagcGGCugGACGg -3'
miRNA:   3'- aCGU----UCGGUGGUa-GGau-----UCGugUUGC- -5'
23656 5' -51.3 NC_005261.1 + 104526 0.73 0.7639
Target:  5'- cGCGacggcGGCCGCCA-CC-AGGCGCAGCu -3'
miRNA:   3'- aCGU-----UCGGUGGUaGGaUUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 104334 0.66 0.97991
Target:  5'- cGCGuccAGCgGCCggCCgucGCGCAGCGc -3'
miRNA:   3'- aCGU---UCGgUGGuaGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 104153 0.66 0.985968
Target:  5'- gGUcGGCCACCGcgccgUCCgcgGGCGCcGCGc -3'
miRNA:   3'- aCGuUCGGUGGU-----AGGau-UCGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 103903 0.67 0.962289
Target:  5'- aGcCGGGCCACCcgcgCCgccaggucGGGCGCGGCGu -3'
miRNA:   3'- aC-GUUCGGUGGua--GGa-------UUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 103593 0.69 0.936043
Target:  5'- cGCucGCCGCCGUggCCgcGGCgGCAGCGc -3'
miRNA:   3'- aCGuuCGGUGGUA--GGauUCG-UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 103038 0.73 0.773816
Target:  5'- cGCGGGCCGcagggcCCAgcgCCUGucccGGCACGGCGc -3'
miRNA:   3'- aCGUUCGGU------GGUa--GGAU----UCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 102973 0.67 0.972092
Target:  5'- cGCGGGCUccGCCG-CCgc-GCGCGACa -3'
miRNA:   3'- aCGUUCGG--UGGUaGGauuCGUGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.