miRNA display CGI


Results 61 - 80 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 102935 0.68 0.950316
Target:  5'- cGCAGcGCCGCCG-CCgcuGCgGCGGCGg -3'
miRNA:   3'- aCGUU-CGGUGGUaGGauuCG-UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 102770 0.71 0.863609
Target:  5'- cGCGAGCgCGCCcgaggCCUcgccccggccgcGAGCGCGGCGc -3'
miRNA:   3'- aCGUUCG-GUGGua---GGA------------UUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 102428 0.71 0.855536
Target:  5'- cUGCGcGGCCGCC-UCCUcGGCGCGcCGc -3'
miRNA:   3'- -ACGU-UCGGUGGuAGGAuUCGUGUuGC- -5'
23656 5' -51.3 NC_005261.1 + 101964 0.66 0.977511
Target:  5'- gGCAcGGCCGCCAggucgcccUCC-AGGUACGucACGg -3'
miRNA:   3'- aCGU-UCGGUGGU--------AGGaUUCGUGU--UGC- -5'
23656 5' -51.3 NC_005261.1 + 101004 0.67 0.974908
Target:  5'- cGCcAGCCGCgCGUCC--AGCGCGccugugaacGCGg -3'
miRNA:   3'- aCGuUCGGUG-GUAGGauUCGUGU---------UGC- -5'
23656 5' -51.3 NC_005261.1 + 100941 0.7 0.879055
Target:  5'- cUGCAGGCC-CgCGUCCacGGCGCGcGCGg -3'
miRNA:   3'- -ACGUUCGGuG-GUAGGauUCGUGU-UGC- -5'
23656 5' -51.3 NC_005261.1 + 100793 0.67 0.974908
Target:  5'- cGCAGGCCAgCAggUCCcggaaGGGCGCGuGCGc -3'
miRNA:   3'- aCGUUCGGUgGU--AGGa----UUCGUGU-UGC- -5'
23656 5' -51.3 NC_005261.1 + 100421 0.71 0.863609
Target:  5'- cGCAucgAGgCGCCcgCCUgcGAGUACAGCGc -3'
miRNA:   3'- aCGU---UCgGUGGuaGGA--UUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 100229 0.66 0.984129
Target:  5'- aGCucGGCCACCG-CC-GGGCGC-ACGu -3'
miRNA:   3'- aCGu-UCGGUGGUaGGaUUCGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 100058 0.67 0.972092
Target:  5'- aGCGcGCCGCCG-CCgcccggGGGCGCGccGCGc -3'
miRNA:   3'- aCGUuCGGUGGUaGGa-----UUCGUGU--UGC- -5'
23656 5' -51.3 NC_005261.1 + 99869 0.68 0.945819
Target:  5'- cGCGcGCCGCCG-CCgcucGGCGCGAgGg -3'
miRNA:   3'- aCGUuCGGUGGUaGGau--UCGUGUUgC- -5'
23656 5' -51.3 NC_005261.1 + 98676 0.69 0.913324
Target:  5'- gGCGGGCUccGCCGgggCCggAGGCGCGGCc -3'
miRNA:   3'- aCGUUCGG--UGGUa--GGa-UUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 98566 0.72 0.780674
Target:  5'- gGCGGGCgGCCGUCCUccgcgggcucgggcGAGUagGCGGCGc -3'
miRNA:   3'- aCGUUCGgUGGUAGGA--------------UUCG--UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 98185 0.69 0.906984
Target:  5'- --gGAGCCGCCGg---GGGCGCGGCGg -3'
miRNA:   3'- acgUUCGGUGGUaggaUUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 98070 0.66 0.982113
Target:  5'- cGCGGGCgGCgggugUGUCCUuggagaaucuggGGGCGCGGCGg -3'
miRNA:   3'- aCGUUCGgUG-----GUAGGA------------UUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 97931 0.69 0.936043
Target:  5'- cUGUAcuGGCCGCCAgcUCC--GGCgGCAACGa -3'
miRNA:   3'- -ACGU--UCGGUGGU--AGGauUCG-UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 97798 0.67 0.961926
Target:  5'- gGCcGGCgACCGUCCgccGGCGCccccgcaGACGg -3'
miRNA:   3'- aCGuUCGgUGGUAGGau-UCGUG-------UUGC- -5'
23656 5' -51.3 NC_005261.1 + 96744 0.68 0.941062
Target:  5'- nGCGAGUC-CCggCCUGGGcCGCGGCc -3'
miRNA:   3'- aCGUUCGGuGGuaGGAUUC-GUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 96722 0.7 0.893526
Target:  5'- gGCGGG-CACCA-CCcGGGCGCGGCGc -3'
miRNA:   3'- aCGUUCgGUGGUaGGaUUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 95148 0.69 0.93076
Target:  5'- cUGCuGGUCGCCGggaaCCUGcAGUGCGGCGa -3'
miRNA:   3'- -ACGuUCGGUGGUa---GGAU-UCGUGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.