miRNA display CGI


Results 81 - 100 of 222 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 94393 0.69 0.924643
Target:  5'- cGCGgcGGCgGCC-UCCUcgacgaaGGGCGCGACGu -3'
miRNA:   3'- aCGU--UCGgUGGuAGGA-------UUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 94090 0.7 0.879055
Target:  5'- gGgAAcGCCGCCGUCCgugcggAAGCAC-ACGu -3'
miRNA:   3'- aCgUU-CGGUGGUAGGa-----UUCGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 93926 0.7 0.886415
Target:  5'- cGCGGGCUugcGCCGUCCgcgGGCGCcGCc -3'
miRNA:   3'- aCGUUCGG---UGGUAGGau-UCGUGuUGc -5'
23656 5' -51.3 NC_005261.1 + 93890 0.68 0.954557
Target:  5'- aGCAgcgcGGUCGCCAgcgaCUGcgGGCGCGGCGc -3'
miRNA:   3'- aCGU----UCGGUGGUag--GAU--UCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 93323 0.71 0.838725
Target:  5'- aGCGGaguguGCCACCAcgUCCgc-GCGCAGCGc -3'
miRNA:   3'- aCGUU-----CGGUGGU--AGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 92416 0.7 0.878305
Target:  5'- gGCAauuaucGGCCACCGUCCgcgAgaggucgaacgggAGCACcACGg -3'
miRNA:   3'- aCGU------UCGGUGGUAGGa--U-------------UCGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 92340 0.68 0.941062
Target:  5'- cGCGGGCCACCgGUCac-GGUGCAGgCGg -3'
miRNA:   3'- aCGUUCGGUGG-UAGgauUCGUGUU-GC- -5'
23656 5' -51.3 NC_005261.1 + 92097 0.72 0.821083
Target:  5'- cGCAcGCCcCCGUCCcgcAGCACGugGu -3'
miRNA:   3'- aCGUuCGGuGGUAGGau-UCGUGUugC- -5'
23656 5' -51.3 NC_005261.1 + 90668 0.68 0.941062
Target:  5'- cGC-GGCCACCGUgacgaCCaucGGGCGCGACa -3'
miRNA:   3'- aCGuUCGGUGGUA-----GGa--UUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 90586 0.69 0.934486
Target:  5'- aGCAGGCCGCCAUCaaggucguguguaaCUcgguGUACGGCu -3'
miRNA:   3'- aCGUUCGGUGGUAG--------------GAuu--CGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 89655 0.68 0.958547
Target:  5'- cGCGGGCCagaACCGcuUCCagAAGCAgAGCa -3'
miRNA:   3'- aCGUUCGG---UGGU--AGGa-UUCGUgUUGc -5'
23656 5' -51.3 NC_005261.1 + 89394 0.71 0.847239
Target:  5'- cUGCGAccuGCCGCCGgccuUCCUcGGCGCGugcGCGg -3'
miRNA:   3'- -ACGUU---CGGUGGU----AGGAuUCGUGU---UGC- -5'
23656 5' -51.3 NC_005261.1 + 88783 0.67 0.962289
Target:  5'- gGCccuGGCCGCCGgcgCCgcgcAGCAgGACGc -3'
miRNA:   3'- aCGu--UCGGUGGUa--GGau--UCGUgUUGC- -5'
23656 5' -51.3 NC_005261.1 + 88474 0.69 0.925213
Target:  5'- gGCGGGCCguGCCGcgCCgGAGCGCGccGCGc -3'
miRNA:   3'- aCGUUCGG--UGGUa-GGaUUCGUGU--UGC- -5'
23656 5' -51.3 NC_005261.1 + 88435 0.7 0.886415
Target:  5'- cGCGGGCCACCGcUgCUGGccGCGCcGCGu -3'
miRNA:   3'- aCGUUCGGUGGU-AgGAUU--CGUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 88204 0.66 0.984129
Target:  5'- gGCGGGCCGCg--CCggcAAGCGCG-CGg -3'
miRNA:   3'- aCGUUCGGUGguaGGa--UUCGUGUuGC- -5'
23656 5' -51.3 NC_005261.1 + 87777 0.67 0.974086
Target:  5'- cGCGagGGUCACCGUCUUGgccgccgcguccauGGC-CGGCGg -3'
miRNA:   3'- aCGU--UCGGUGGUAGGAU--------------UCGuGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 87032 0.67 0.974908
Target:  5'- cGCGcGCCACCGcgUCC-AGGCugcgcacacGCAGCGc -3'
miRNA:   3'- aCGUuCGGUGGU--AGGaUUCG---------UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 86921 0.67 0.962289
Target:  5'- cGCGuccaccGCCGCCG-CCgc-GCGCGGCGg -3'
miRNA:   3'- aCGUu-----CGGUGGUaGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 86830 0.69 0.93076
Target:  5'- gUGUcGGCCGCCAUCaccgAGGC-CAGCc -3'
miRNA:   3'- -ACGuUCGGUGGUAGga--UUCGuGUUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.