miRNA display CGI


Results 21 - 40 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 5' -51.3 NC_005261.1 + 133096 0.72 0.783591
Target:  5'- cGCAAGgCCGCCGUCaaccGCGCGGCc -3'
miRNA:   3'- aCGUUC-GGUGGUAGgauuCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 98566 0.72 0.780674
Target:  5'- gGCGGGCgGCCGUCCUccgcgggcucgggcGAGUagGCGGCGc -3'
miRNA:   3'- aCGUUCGgUGGUAGGA--------------UUCG--UGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 2537 0.74 0.691464
Target:  5'- aGUAGGCCGCCAgcgCCgcGGCGCugggcGCGg -3'
miRNA:   3'- aCGUUCGGUGGUa--GGauUCGUGu----UGC- -5'
23656 5' -51.3 NC_005261.1 + 17057 0.75 0.648629
Target:  5'- cUGCucGCgGCCGUCCUGgaAGgGCGACGg -3'
miRNA:   3'- -ACGuuCGgUGGUAGGAU--UCgUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 132611 0.76 0.613086
Target:  5'- gGCGAGCCGCCAgggggCgCUGgcgccgaggacgcgGGCGCGGCGg -3'
miRNA:   3'- aCGUUCGGUGGUa----G-GAU--------------UCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 121546 0.76 0.605558
Target:  5'- cUGUcgGAGCCGCCGUCCUcGGCGaagGGCGg -3'
miRNA:   3'- -ACG--UUCGGUGGUAGGAuUCGUg--UUGC- -5'
23656 5' -51.3 NC_005261.1 + 31038 0.76 0.594822
Target:  5'- gGCGcGCCGCCggGUCCccAGCGCGGCGg -3'
miRNA:   3'- aCGUuCGGUGG--UAGGauUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 130125 0.77 0.551211
Target:  5'- gGCGAGCCgccgcgcGCCGUCCgccGAGCGCAccACGu -3'
miRNA:   3'- aCGUUCGG-------UGGUAGGa--UUCGUGU--UGC- -5'
23656 5' -51.3 NC_005261.1 + 59594 0.77 0.520954
Target:  5'- cGCGccGCCACCAccUCCgcGGCGCGGCGg -3'
miRNA:   3'- aCGUu-CGGUGGU--AGGauUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 67651 0.8 0.369099
Target:  5'- cGCGGGCCGcCCGUCCgc-GCGCGGCGc -3'
miRNA:   3'- aCGUUCGGU-GGUAGGauuCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 56809 0.74 0.702061
Target:  5'- aGCGGGCCACgGuguUCCUGgugccgcggcGGCACGGCa -3'
miRNA:   3'- aCGUUCGGUGgU---AGGAU----------UCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 3513 0.74 0.712593
Target:  5'- aGCGcGGCCGCC-UCC--AGCGCGGCGg -3'
miRNA:   3'- aCGU-UCGGUGGuAGGauUCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 103038 0.73 0.773816
Target:  5'- cGCGGGCCGcagggcCCAgcgCCUGucccGGCACGGCGc -3'
miRNA:   3'- aCGUUCGGU------GGUa--GGAU----UCGUGUUGC- -5'
23656 5' -51.3 NC_005261.1 + 46130 0.73 0.773816
Target:  5'- aGCAGGUCGCCGcCCgagaacgccGAGCGCGGCa -3'
miRNA:   3'- aCGUUCGGUGGUaGGa--------UUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 104526 0.73 0.7639
Target:  5'- cGCGacggcGGCCGCCA-CC-AGGCGCAGCu -3'
miRNA:   3'- aCGU-----UCGGUGGUaGGaUUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 117365 0.73 0.743691
Target:  5'- cGCAAgGCCGCCcUCCUGgaGGCGCGcugcuucgGCGg -3'
miRNA:   3'- aCGUU-CGGUGGuAGGAU--UCGUGU--------UGC- -5'
23656 5' -51.3 NC_005261.1 + 49533 0.73 0.733419
Target:  5'- gGCcAGCCGCCGUCCgcGGcCACcACGu -3'
miRNA:   3'- aCGuUCGGUGGUAGGauUC-GUGuUGC- -5'
23656 5' -51.3 NC_005261.1 + 3430 0.74 0.72305
Target:  5'- cGCGGGCCAgCGUCCaggcGGGCGCG-CGg -3'
miRNA:   3'- aCGUUCGGUgGUAGGa---UUCGUGUuGC- -5'
23656 5' -51.3 NC_005261.1 + 107535 0.74 0.712593
Target:  5'- cGCGucggcGGCCACCAgcacgUCCgaGAGCACGGCa -3'
miRNA:   3'- aCGU-----UCGGUGGU-----AGGa-UUCGUGUUGc -5'
23656 5' -51.3 NC_005261.1 + 72755 0.74 0.712593
Target:  5'- gGCGGGCCGCaugCCc-AGCACGGCGg -3'
miRNA:   3'- aCGUUCGGUGguaGGauUCGUGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.