Results 41 - 60 of 222 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 121546 | 0.76 | 0.605558 |
Target: 5'- cUGUcgGAGCCGCCGUCCUcGGCGaagGGCGg -3' miRNA: 3'- -ACG--UUCGGUGGUAGGAuUCGUg--UUGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 31038 | 0.76 | 0.594822 |
Target: 5'- gGCGcGCCGCCggGUCCccAGCGCGGCGg -3' miRNA: 3'- aCGUuCGGUGG--UAGGauUCGUGUUGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 130125 | 0.77 | 0.551211 |
Target: 5'- gGCGAGCCgccgcgcGCCGUCCgccGAGCGCAccACGu -3' miRNA: 3'- aCGUUCGG-------UGGUAGGa--UUCGUGU--UGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 59594 | 0.77 | 0.520954 |
Target: 5'- cGCGccGCCACCAccUCCgcGGCGCGGCGg -3' miRNA: 3'- aCGUu-CGGUGGU--AGGauUCGUGUUGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 67651 | 0.8 | 0.369099 |
Target: 5'- cGCGGGCCGcCCGUCCgc-GCGCGGCGc -3' miRNA: 3'- aCGUUCGGU-GGUAGGauuCGUGUUGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 49533 | 0.73 | 0.733419 |
Target: 5'- gGCcAGCCGCCGUCCgcGGcCACcACGu -3' miRNA: 3'- aCGuUCGGUGGUAGGauUC-GUGuUGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 117365 | 0.73 | 0.743691 |
Target: 5'- cGCAAgGCCGCCcUCCUGgaGGCGCGcugcuucgGCGg -3' miRNA: 3'- aCGUU-CGGUGGuAGGAU--UCGUGU--------UGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 135884 | 0.71 | 0.847239 |
Target: 5'- aGCAGGCCugCGgc---AGCACGACGu -3' miRNA: 3'- aCGUUCGGugGUaggauUCGUGUUGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 115996 | 0.71 | 0.838725 |
Target: 5'- cUGaCGAGCCGCCcgaggcggCCUGAGCcgcCGACGg -3' miRNA: 3'- -AC-GUUCGGUGGua------GGAUUCGu--GUUGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 93323 | 0.71 | 0.838725 |
Target: 5'- aGCGGaguguGCCACCAcgUCCgc-GCGCAGCGc -3' miRNA: 3'- aCGUU-----CGGUGGU--AGGauuCGUGUUGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 23608 | 0.71 | 0.838725 |
Target: 5'- gGCugucGCCGCCGcugCCgGGGCGCGGCGg -3' miRNA: 3'- aCGuu--CGGUGGUa--GGaUUCGUGUUGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 108405 | 0.71 | 0.830004 |
Target: 5'- aGCAGccgcGCCACCGcgCCUGcguGCACGGCa -3' miRNA: 3'- aCGUU----CGGUGGUa-GGAUu--CGUGUUGc -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 135236 | 0.72 | 0.821083 |
Target: 5'- cGCGucGCCGCCGUCUUugcGGGCGCG-CGg -3' miRNA: 3'- aCGUu-CGGUGGUAGGA---UUCGUGUuGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 92097 | 0.72 | 0.821083 |
Target: 5'- cGCAcGCCcCCGUCCcgcAGCACGugGu -3' miRNA: 3'- aCGUuCGGuGGUAGGau-UCGUGUugC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 105130 | 0.72 | 0.811971 |
Target: 5'- cGCGGGCCGCCGgcgcgcgcaggUCCUcgcggcucGAGgGCGGCGu -3' miRNA: 3'- aCGUUCGGUGGU-----------AGGA--------UUCgUGUUGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 133096 | 0.72 | 0.783591 |
Target: 5'- cGCAAGgCCGCCGUCaaccGCGCGGCc -3' miRNA: 3'- aCGUUC-GGUGGUAGgauuCGUGUUGc -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 98566 | 0.72 | 0.780674 |
Target: 5'- gGCGGGCgGCCGUCCUccgcgggcucgggcGAGUagGCGGCGc -3' miRNA: 3'- aCGUUCGgUGGUAGGA--------------UUCG--UGUUGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 103038 | 0.73 | 0.773816 |
Target: 5'- cGCGGGCCGcagggcCCAgcgCCUGucccGGCACGGCGc -3' miRNA: 3'- aCGUUCGGU------GGUa--GGAU----UCGUGUUGC- -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 46130 | 0.73 | 0.773816 |
Target: 5'- aGCAGGUCGCCGcCCgagaacgccGAGCGCGGCa -3' miRNA: 3'- aCGUUCGGUGGUaGGa--------UUCGUGUUGc -5' |
|||||||
23656 | 5' | -51.3 | NC_005261.1 | + | 104526 | 0.73 | 0.7639 |
Target: 5'- cGCGacggcGGCCGCCA-CC-AGGCGCAGCu -3' miRNA: 3'- aCGU-----UCGGUGGUaGGaUUCGUGUUGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home