miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23657 3' -58.9 NC_005261.1 + 77172 0.66 0.788877
Target:  5'- aGGCGGgcaucGCAGGGcacacguaucugcagGCGAGCGCGg- -3'
miRNA:   3'- cCCGCUac---CGUCUCa--------------CGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 22744 0.66 0.787974
Target:  5'- cGGGCGcggGGCGGcG-GCGGcccaCGCGUCu -3'
miRNA:   3'- -CCCGCua-CCGUCuCaCGCUc---GCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 57846 0.66 0.787974
Target:  5'- cGGGCGcgGGCGGcaAGgccucgGCGcuCGgGUCg -3'
miRNA:   3'- -CCCGCuaCCGUC--UCa-----CGCucGCgCAG- -5'
23657 3' -58.9 NC_005261.1 + 71970 0.66 0.787974
Target:  5'- gGGGCGcggagcgcgcGGCAG-GUGCGca-GCGUCg -3'
miRNA:   3'- -CCCGCua--------CCGUCuCACGCucgCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 38939 0.66 0.787974
Target:  5'- cGGCGGccgGGCGGGccGCGGcGCGCGg- -3'
miRNA:   3'- cCCGCUa--CCGUCUcaCGCU-CGCGCag -5'
23657 3' -58.9 NC_005261.1 + 68339 0.66 0.787974
Target:  5'- cGGCGAccccuaccUGGCcGAGUGCuu-CGUGUCg -3'
miRNA:   3'- cCCGCU--------ACCGuCUCACGcucGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 118393 0.66 0.787974
Target:  5'- aGGCGcUGGCGGcc-GCGGGCGCc-- -3'
miRNA:   3'- cCCGCuACCGUCucaCGCUCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 93444 0.66 0.782524
Target:  5'- aGGGCcGUGGcCAGcaccggccccagcgcGGUGcCGGggcGCGCGUCg -3'
miRNA:   3'- -CCCGcUACC-GUC---------------UCAC-GCU---CGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 74856 0.66 0.778865
Target:  5'- cGGCGcgccgGGCGGAGgagGCGGaCGCGg- -3'
miRNA:   3'- cCCGCua---CCGUCUCa--CGCUcGCGCag -5'
23657 3' -58.9 NC_005261.1 + 86688 0.66 0.778865
Target:  5'- cGGCGA-GGCGGcccacGUacGCGcccAGCGCGUCc -3'
miRNA:   3'- cCCGCUaCCGUCu----CA--CGC---UCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 93568 0.66 0.778865
Target:  5'- cGGCGGUgcGGCGGGacGCGAucGCGCGcUCg -3'
miRNA:   3'- cCCGCUA--CCGUCUcaCGCU--CGCGC-AG- -5'
23657 3' -58.9 NC_005261.1 + 74420 0.66 0.778865
Target:  5'- cGGGCGGgagGGCcGAGga-GAGCGCc-- -3'
miRNA:   3'- -CCCGCUa--CCGuCUCacgCUCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 98924 0.66 0.778865
Target:  5'- gGGGuCGGcuGCGGGGgGC-AGCGCGUCc -3'
miRNA:   3'- -CCC-GCUacCGUCUCaCGcUCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 118893 0.66 0.778865
Target:  5'- cGGGCGcgcugGUGGCcugcgucuGGGUccggcgccGCGGGCGCGg- -3'
miRNA:   3'- -CCCGC-----UACCGu-------CUCA--------CGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 13115 0.66 0.778865
Target:  5'- gGGGCGucGGCGGcc-GCGGGgCGCGUg -3'
miRNA:   3'- -CCCGCuaCCGUCucaCGCUC-GCGCAg -5'
23657 3' -58.9 NC_005261.1 + 57191 0.66 0.769628
Target:  5'- cGGCGGgaagGGgGGGGgggGCGcGCGgGUCc -3'
miRNA:   3'- cCCGCUa---CCgUCUCa--CGCuCGCgCAG- -5'
23657 3' -58.9 NC_005261.1 + 7994 0.66 0.769628
Target:  5'- uGGGagaGggGGgAGAGgggggcuugaGCGAGCGgGUCu -3'
miRNA:   3'- -CCCg--CuaCCgUCUCa---------CGCUCGCgCAG- -5'
23657 3' -58.9 NC_005261.1 + 34197 0.66 0.769628
Target:  5'- aGGGcCGGaGGCAGA---CG-GCGCGUCg -3'
miRNA:   3'- -CCC-GCUaCCGUCUcacGCuCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 128101 0.66 0.769628
Target:  5'- cGGGCGAgcggcgcgGcGCGGGGUcggGcCGAGUGCGg- -3'
miRNA:   3'- -CCCGCUa-------C-CGUCUCA---C-GCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 84955 0.66 0.769628
Target:  5'- cGGCGGccGCcGAGgcguCGGGCGCGUCc -3'
miRNA:   3'- cCCGCUacCGuCUCac--GCUCGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.