miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23657 3' -58.9 NC_005261.1 + 34197 0.66 0.769628
Target:  5'- aGGGcCGGaGGCAGA---CG-GCGCGUCg -3'
miRNA:   3'- -CCC-GCUaCCGUCUcacGCuCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 84955 0.66 0.769628
Target:  5'- cGGCGGccGCcGAGgcguCGGGCGCGUCc -3'
miRNA:   3'- cCCGCUacCGuCUCac--GCUCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 77172 0.66 0.788877
Target:  5'- aGGCGGgcaucGCAGGGcacacguaucugcagGCGAGCGCGg- -3'
miRNA:   3'- cCCGCUac---CGUCUCa--------------CGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 27251 0.66 0.741233
Target:  5'- gGGGUGG-GGCGGGGUguGCGGGCaGCc-- -3'
miRNA:   3'- -CCCGCUaCCGUCUCA--CGCUCG-CGcag -5'
23657 3' -58.9 NC_005261.1 + 74450 0.66 0.750803
Target:  5'- cGGCGggGGguGGGgGCGccgcccccGGCGCGg- -3'
miRNA:   3'- cCCGCuaCCguCUCaCGC--------UCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 14129 0.66 0.748897
Target:  5'- cGGGCGGUgGGCAgucgcucgcGAGgacgcuccagccGCGAacggcGCGCGUCu -3'
miRNA:   3'- -CCCGCUA-CCGU---------CUCa-----------CGCU-----CGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 24125 0.66 0.741233
Target:  5'- aGGCGggGGUGGGGgcuggGUGGGCGgGg- -3'
miRNA:   3'- cCCGCuaCCGUCUCa----CGCUCGCgCag -5'
23657 3' -58.9 NC_005261.1 + 43793 0.66 0.750803
Target:  5'- aGGGCGccgcGGguGAGgggGCGccgGGCGCGcCc -3'
miRNA:   3'- -CCCGCua--CCguCUCa--CGC---UCGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 134586 0.66 0.764027
Target:  5'- aGGGCGGgccUGGCgagcauaaagcgccgGGucuGGUGCGAacGCGgCGUCg -3'
miRNA:   3'- -CCCGCU---ACCG---------------UC---UCACGCU--CGC-GCAG- -5'
23657 3' -58.9 NC_005261.1 + 1041 0.66 0.750803
Target:  5'- aGGGCGGcgGGCGGcG-GCGuuagcGGCGCGg- -3'
miRNA:   3'- -CCCGCUa-CCGUCuCaCGC-----UCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 3838 0.66 0.741233
Target:  5'- cGGGCGcUGGCGGcAGcgGCGccGGCGCc-- -3'
miRNA:   3'- -CCCGCuACCGUC-UCa-CGC--UCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 105290 0.66 0.750803
Target:  5'- cGGCGAgcccgGGCGc---GCGAGCGCGg- -3'
miRNA:   3'- cCCGCUa----CCGUcucaCGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 16409 0.66 0.767765
Target:  5'- cGGGCGGUgcGGgAGAGgcccccucgacgGCGGGCgGCGg- -3'
miRNA:   3'- -CCCGCUA--CCgUCUCa-----------CGCUCG-CGCag -5'
23657 3' -58.9 NC_005261.1 + 75214 0.66 0.741233
Target:  5'- -cGCGGUGGCGGcgcugcAGUccaGCGGGCGCa-- -3'
miRNA:   3'- ccCGCUACCGUC------UCA---CGCUCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 122461 0.66 0.754603
Target:  5'- aGGCcGUGGCAGcGUacgccaggaucuccuGCaAGCGCGUCu -3'
miRNA:   3'- cCCGcUACCGUCuCA---------------CGcUCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 7994 0.66 0.769628
Target:  5'- uGGGagaGggGGgAGAGgggggcuugaGCGAGCGgGUCu -3'
miRNA:   3'- -CCCg--CuaCCgUCUCa---------CGCUCGCgCAG- -5'
23657 3' -58.9 NC_005261.1 + 58552 0.66 0.767765
Target:  5'- cGGGCuccugcgccgucGUGGCcgcGAGcgGCGAGCGCGa- -3'
miRNA:   3'- -CCCGc-----------UACCGu--CUCa-CGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 9628 0.66 0.741233
Target:  5'- aGGCGggGGUGGGGgcuggGUGGGCGgGg- -3'
miRNA:   3'- cCCGCuaCCGUCUCa----CGCUCGCgCag -5'
23657 3' -58.9 NC_005261.1 + 57191 0.66 0.769628
Target:  5'- cGGCGGgaagGGgGGGGgggGCGcGCGgGUCc -3'
miRNA:   3'- cCCGCUa---CCgUCUCa--CGCuCGCgCAG- -5'
23657 3' -58.9 NC_005261.1 + 56142 0.66 0.741233
Target:  5'- gGGGCGcgGGCcGAGggugGCG-GCaGCGg- -3'
miRNA:   3'- -CCCGCuaCCGuCUCa---CGCuCG-CGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.