miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23657 3' -58.9 NC_005261.1 + 1413 0.67 0.692167
Target:  5'- cGGCGgcGGCGGGG-GCG-GCGCc-- -3'
miRNA:   3'- cCCGCuaCCGUCUCaCGCuCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 59443 0.67 0.692167
Target:  5'- aGGCGccGGCAGcAGcGCGGccGCGgCGUCg -3'
miRNA:   3'- cCCGCuaCCGUC-UCaCGCU--CGC-GCAG- -5'
23657 3' -58.9 NC_005261.1 + 74348 0.67 0.692167
Target:  5'- aGGcGCGgcGGCGGaAGggGCGGcCGCGUCc -3'
miRNA:   3'- -CC-CGCuaCCGUC-UCa-CGCUcGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 110805 0.67 0.682172
Target:  5'- cGGGCGAggaGGCGGGG-GCGgacggGGcCGCGg- -3'
miRNA:   3'- -CCCGCUa--CCGUCUCaCGC-----UC-GCGCag -5'
23657 3' -58.9 NC_005261.1 + 134901 0.67 0.702113
Target:  5'- cGGUGGUGGagcGGGUGCGcaAGCGCa-- -3'
miRNA:   3'- cCCGCUACCgu-CUCACGC--UCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 98057 0.67 0.702113
Target:  5'- cGGGCGgcGGgAccgcGGGcgGCGGGUGUGUCc -3'
miRNA:   3'- -CCCGCuaCCgU----CUCa-CGCUCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 13672 0.67 0.73157
Target:  5'- cGGGgGggGcGCGGGGcgcGCGGGCGUGg- -3'
miRNA:   3'- -CCCgCuaC-CGUCUCa--CGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 98591 0.67 0.724756
Target:  5'- cGGGCGAguaGGCGGcgcccgcaaaauccgGCGGGUauGCGUCg -3'
miRNA:   3'- -CCCGCUa--CCGUCuca------------CGCUCG--CGCAG- -5'
23657 3' -58.9 NC_005261.1 + 21818 0.67 0.721824
Target:  5'- cGGGCccgcGGCGGGcgcgcGUGCGGGCGgGcUCg -3'
miRNA:   3'- -CCCGcua-CCGUCU-----CACGCUCGCgC-AG- -5'
23657 3' -58.9 NC_005261.1 + 98195 0.67 0.712002
Target:  5'- gGGGCGc-GGCGGGcaGCGGGCGCc-- -3'
miRNA:   3'- -CCCGCuaCCGUCUcaCGCUCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 3356 0.67 0.712002
Target:  5'- cGGcGCGccGGCcuucAGGGccGCGAGCGCGg- -3'
miRNA:   3'- -CC-CGCuaCCG----UCUCa-CGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 3874 0.67 0.73157
Target:  5'- cGGCGAgcacGGCGcGcAGcucgGCGAGCGCGg- -3'
miRNA:   3'- cCCGCUa---CCGU-C-UCa---CGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 22577 0.67 0.712002
Target:  5'- aGGGgGAgagcGGCGGAG-GCG-GCGCa-- -3'
miRNA:   3'- -CCCgCUa---CCGUCUCaCGCuCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 51006 0.67 0.702113
Target:  5'- uGGGCGc-GGCgGGAGcucgGCGAGCGCc-- -3'
miRNA:   3'- -CCCGCuaCCG-UCUCa---CGCUCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 19493 0.67 0.702113
Target:  5'- uGGGCGAUccGGCgGGAGUGCaGGUacGCGa- -3'
miRNA:   3'- -CCCGCUA--CCG-UCUCACGcUCG--CGCag -5'
23657 3' -58.9 NC_005261.1 + 17462 0.67 0.702113
Target:  5'- gGGGaaacuGcgGGCAGAc-GCGGGCGCGcCg -3'
miRNA:   3'- -CCCg----CuaCCGUCUcaCGCUCGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 5559 0.67 0.712002
Target:  5'- gGGGCGcccgagcGGCGGAGaUGgGGGCGCc-- -3'
miRNA:   3'- -CCCGCua-----CCGUCUC-ACgCUCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 95672 0.67 0.702113
Target:  5'- cGGGCGcgGGUGuGAgcacGUGCacGAGCGCGa- -3'
miRNA:   3'- -CCCGCuaCCGU-CU----CACG--CUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 75477 0.68 0.65198
Target:  5'- cGGGCGgcGGCGcGGGccgcuaCGAGCGCGg- -3'
miRNA:   3'- -CCCGCuaCCGU-CUCac----GCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 67672 0.68 0.65198
Target:  5'- cGGCGccaGGCGcg--GUGAGCGCGUCa -3'
miRNA:   3'- cCCGCua-CCGUcucaCGCUCGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.