miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23657 3' -58.9 NC_005261.1 + 24024 0.69 0.601452
Target:  5'- gGGGCGGaGcGCGGGGUuCGGGUggGCGUCc -3'
miRNA:   3'- -CCCGCUaC-CGUCUCAcGCUCG--CGCAG- -5'
23657 3' -58.9 NC_005261.1 + 111460 0.69 0.601452
Target:  5'- cGGGCGccGGC-GAGgccaaaagGCGGGCGgGUg -3'
miRNA:   3'- -CCCGCuaCCGuCUCa-------CGCUCGCgCAg -5'
23657 3' -58.9 NC_005261.1 + 43845 0.69 0.601452
Target:  5'- cGGCGAgGGC-GAGgacGCGGcCGCGUCg -3'
miRNA:   3'- cCCGCUaCCGuCUCa--CGCUcGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 74886 0.69 0.611542
Target:  5'- cGGCGgcGGCGGAGUcgGCGGcccgcgcuggccGCGCGg- -3'
miRNA:   3'- cCCGCuaCCGUCUCA--CGCU------------CGCGCag -5'
23657 3' -58.9 NC_005261.1 + 67086 0.69 0.611542
Target:  5'- cGGGCGGuccaUGGCGcGAcgcgGUGCGGGCgGCG-Cg -3'
miRNA:   3'- -CCCGCU----ACCGU-CU----CACGCUCG-CGCaG- -5'
23657 3' -58.9 NC_005261.1 + 43191 0.69 0.611542
Target:  5'- cGGCGA-GGCAGAG-GUG-GUGCGg- -3'
miRNA:   3'- cCCGCUaCCGUCUCaCGCuCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 138203 0.69 0.611542
Target:  5'- cGGGCGGggGGCAGGGcggacgGCGGcucggccgccGCGCGg- -3'
miRNA:   3'- -CCCGCUa-CCGUCUCa-----CGCU----------CGCGCag -5'
23657 3' -58.9 NC_005261.1 + 532 0.69 0.611542
Target:  5'- cGGGCGGggGGCAGGGcggacgGCGGcucggccgccGCGCGg- -3'
miRNA:   3'- -CCCGCUa-CCGUCUCa-----CGCU----------CGCGCag -5'
23657 3' -58.9 NC_005261.1 + 98234 0.68 0.621647
Target:  5'- cGGGCaucGAUuuccgcGGCccGGUGCG-GCGCGUCa -3'
miRNA:   3'- -CCCG---CUA------CCGucUCACGCuCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 370 0.68 0.621647
Target:  5'- cGGCGGUGGCGGcGGUgGCG-GCgGCGg- -3'
miRNA:   3'- cCCGCUACCGUC-UCA-CGCuCG-CGCag -5'
23657 3' -58.9 NC_005261.1 + 138041 0.68 0.621647
Target:  5'- cGGCGGUGGCGGcGGUgGCG-GCgGCGg- -3'
miRNA:   3'- cCCGCUACCGUC-UCA-CGCuCG-CGCag -5'
23657 3' -58.9 NC_005261.1 + 82955 0.68 0.621647
Target:  5'- cGGCGccgGGCGGAagacGUG-GuGCGCGUCg -3'
miRNA:   3'- cCCGCua-CCGUCU----CACgCuCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 92731 0.68 0.63176
Target:  5'- gGGaGCGG-GGCGGGGacaGCGAGCGCc-- -3'
miRNA:   3'- -CC-CGCUaCCGUCUCa--CGCUCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 78421 0.68 0.63176
Target:  5'- uGGGCGAUGGgGGGG-GCGAuggggagaagGCGgGg- -3'
miRNA:   3'- -CCCGCUACCgUCUCaCGCU----------CGCgCag -5'
23657 3' -58.9 NC_005261.1 + 84108 0.68 0.641874
Target:  5'- gGGGCGGgaugGGgAGGGgggcaGCGGGCgGgGUCg -3'
miRNA:   3'- -CCCGCUa---CCgUCUCa----CGCUCG-CgCAG- -5'
23657 3' -58.9 NC_005261.1 + 56961 0.68 0.641874
Target:  5'- uGGcGCGGcuccGGCAGuGGUucggcaGCGAGCGCGUg -3'
miRNA:   3'- -CC-CGCUa---CCGUC-UCA------CGCUCGCGCAg -5'
23657 3' -58.9 NC_005261.1 + 72592 0.68 0.641874
Target:  5'- aGGGCGAUcGGCGcgcaaauguaccGGGcggGCGGGCGCa-- -3'
miRNA:   3'- -CCCGCUA-CCGU------------CUCa--CGCUCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 13704 0.68 0.65198
Target:  5'- gGGGCGGgcugggGGCGGGG-GUGGGgGUGg- -3'
miRNA:   3'- -CCCGCUa-----CCGUCUCaCGCUCgCGCag -5'
23657 3' -58.9 NC_005261.1 + 75477 0.68 0.65198
Target:  5'- cGGGCGgcGGCGcGGGccgcuaCGAGCGCGg- -3'
miRNA:   3'- -CCCGCuaCCGU-CUCac----GCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 67672 0.68 0.65198
Target:  5'- cGGCGccaGGCGcg--GUGAGCGCGUCa -3'
miRNA:   3'- cCCGCua-CCGUcucaCGCUCGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.