Results 21 - 40 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23657 | 3' | -58.9 | NC_005261.1 | + | 58552 | 0.66 | 0.767765 |
Target: 5'- cGGGCuccugcgccgucGUGGCcgcGAGcgGCGAGCGCGa- -3' miRNA: 3'- -CCCGc-----------UACCGu--CUCa-CGCUCGCGCag -5' |
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23657 | 3' | -58.9 | NC_005261.1 | + | 16409 | 0.66 | 0.767765 |
Target: 5'- cGGGCGGUgcGGgAGAGgcccccucgacgGCGGGCgGCGg- -3' miRNA: 3'- -CCCGCUA--CCgUCUCa-----------CGCUCG-CGCag -5' |
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23657 | 3' | -58.9 | NC_005261.1 | + | 134586 | 0.66 | 0.764027 |
Target: 5'- aGGGCGGgccUGGCgagcauaaagcgccgGGucuGGUGCGAacGCGgCGUCg -3' miRNA: 3'- -CCCGCU---ACCG---------------UC---UCACGCU--CGC-GCAG- -5' |
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23657 | 3' | -58.9 | NC_005261.1 | + | 56005 | 0.66 | 0.760271 |
Target: 5'- cGGCGggGGCGGGG-GCGGGgaagacgcaauCGCGcCc -3' miRNA: 3'- cCCGCuaCCGUCUCaCGCUC-----------GCGCaG- -5' |
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23657 | 3' | -58.9 | NC_005261.1 | + | 122461 | 0.66 | 0.754603 |
Target: 5'- aGGCcGUGGCAGcGUacgccaggaucuccuGCaAGCGCGUCu -3' miRNA: 3'- cCCGcUACCGUCuCA---------------CGcUCGCGCAG- -5' |
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23657 | 3' | -58.9 | NC_005261.1 | + | 43793 | 0.66 | 0.750803 |
Target: 5'- aGGGCGccgcGGguGAGgggGCGccgGGCGCGcCc -3' miRNA: 3'- -CCCGCua--CCguCUCa--CGC---UCGCGCaG- -5' |
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23657 | 3' | -58.9 | NC_005261.1 | + | 1041 | 0.66 | 0.750803 |
Target: 5'- aGGGCGGcgGGCGGcG-GCGuuagcGGCGCGg- -3' miRNA: 3'- -CCCGCUa-CCGUCuCaCGC-----UCGCGCag -5' |
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23657 | 3' | -58.9 | NC_005261.1 | + | 74450 | 0.66 | 0.750803 |
Target: 5'- cGGCGggGGguGGGgGCGccgcccccGGCGCGg- -3' miRNA: 3'- cCCGCuaCCguCUCaCGC--------UCGCGCag -5' |
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23657 | 3' | -58.9 | NC_005261.1 | + | 105290 | 0.66 | 0.750803 |
Target: 5'- cGGCGAgcccgGGCGc---GCGAGCGCGg- -3' miRNA: 3'- cCCGCUa----CCGUcucaCGCUCGCGCag -5' |
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23657 | 3' | -58.9 | NC_005261.1 | + | 14129 | 0.66 | 0.748897 |
Target: 5'- cGGGCGGUgGGCAgucgcucgcGAGgacgcuccagccGCGAacggcGCGCGUCu -3' miRNA: 3'- -CCCGCUA-CCGU---------CUCa-----------CGCU-----CGCGCAG- -5' |
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23657 | 3' | -58.9 | NC_005261.1 | + | 9628 | 0.66 | 0.741233 |
Target: 5'- aGGCGggGGUGGGGgcuggGUGGGCGgGg- -3' miRNA: 3'- cCCGCuaCCGUCUCa----CGCUCGCgCag -5' |
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23657 | 3' | -58.9 | NC_005261.1 | + | 24125 | 0.66 | 0.741233 |
Target: 5'- aGGCGggGGUGGGGgcuggGUGGGCGgGg- -3' miRNA: 3'- cCCGCuaCCGUCUCa----CGCUCGCgCag -5' |
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23657 | 3' | -58.9 | NC_005261.1 | + | 3838 | 0.66 | 0.741233 |
Target: 5'- cGGGCGcUGGCGGcAGcgGCGccGGCGCc-- -3' miRNA: 3'- -CCCGCuACCGUC-UCa-CGC--UCGCGcag -5' |
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23657 | 3' | -58.9 | NC_005261.1 | + | 56142 | 0.66 | 0.741233 |
Target: 5'- gGGGCGcgGGCcGAGggugGCG-GCaGCGg- -3' miRNA: 3'- -CCCGCuaCCGuCUCa---CGCuCG-CGCag -5' |
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23657 | 3' | -58.9 | NC_005261.1 | + | 75214 | 0.66 | 0.741233 |
Target: 5'- -cGCGGUGGCGGcgcugcAGUccaGCGGGCGCa-- -3' miRNA: 3'- ccCGCUACCGUC------UCA---CGCUCGCGcag -5' |
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23657 | 3' | -58.9 | NC_005261.1 | + | 27251 | 0.66 | 0.741233 |
Target: 5'- gGGGUGG-GGCGGGGUguGCGGGCaGCc-- -3' miRNA: 3'- -CCCGCUaCCGUCUCA--CGCUCG-CGcag -5' |
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23657 | 3' | -58.9 | NC_005261.1 | + | 3874 | 0.67 | 0.73157 |
Target: 5'- cGGCGAgcacGGCGcGcAGcucgGCGAGCGCGg- -3' miRNA: 3'- cCCGCUa---CCGU-C-UCa---CGCUCGCGCag -5' |
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23657 | 3' | -58.9 | NC_005261.1 | + | 13672 | 0.67 | 0.73157 |
Target: 5'- cGGGgGggGcGCGGGGcgcGCGGGCGUGg- -3' miRNA: 3'- -CCCgCuaC-CGUCUCa--CGCUCGCGCag -5' |
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23657 | 3' | -58.9 | NC_005261.1 | + | 98591 | 0.67 | 0.724756 |
Target: 5'- cGGGCGAguaGGCGGcgcccgcaaaauccgGCGGGUauGCGUCg -3' miRNA: 3'- -CCCGCUa--CCGUCuca------------CGCUCG--CGCAG- -5' |
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23657 | 3' | -58.9 | NC_005261.1 | + | 21818 | 0.67 | 0.721824 |
Target: 5'- cGGGCccgcGGCGGGcgcgcGUGCGGGCGgGcUCg -3' miRNA: 3'- -CCCGcua-CCGUCU-----CACGCUCGCgC-AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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