miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23657 3' -58.9 NC_005261.1 + 78 0.76 0.234286
Target:  5'- -cGCGggGGCGGGGUGCGGgGCGCGcCc -3'
miRNA:   3'- ccCGCuaCCGUCUCACGCU-CGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 370 0.68 0.621647
Target:  5'- cGGCGGUGGCGGcGGUgGCG-GCgGCGg- -3'
miRNA:   3'- cCCGCUACCGUC-UCA-CGCuCG-CGCag -5'
23657 3' -58.9 NC_005261.1 + 532 0.69 0.611542
Target:  5'- cGGGCGGggGGCAGGGcggacgGCGGcucggccgccGCGCGg- -3'
miRNA:   3'- -CCCGCUa-CCGUCUCa-----CGCU----------CGCGCag -5'
23657 3' -58.9 NC_005261.1 + 1006 0.71 0.447068
Target:  5'- gGGGCGGggGGCGGGGgGCGGGUGgGc- -3'
miRNA:   3'- -CCCGCUa-CCGUCUCaCGCUCGCgCag -5'
23657 3' -58.9 NC_005261.1 + 1041 0.66 0.750803
Target:  5'- aGGGCGGcgGGCGGcG-GCGuuagcGGCGCGg- -3'
miRNA:   3'- -CCCGCUa-CCGUCuCaCGC-----UCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 1413 0.67 0.692167
Target:  5'- cGGCGgcGGCGGGG-GCG-GCGCc-- -3'
miRNA:   3'- cCCGCuaCCGUCUCaCGCuCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 3356 0.67 0.712002
Target:  5'- cGGcGCGccGGCcuucAGGGccGCGAGCGCGg- -3'
miRNA:   3'- -CC-CGCuaCCG----UCUCa-CGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 3838 0.66 0.741233
Target:  5'- cGGGCGcUGGCGGcAGcgGCGccGGCGCc-- -3'
miRNA:   3'- -CCCGCuACCGUC-UCa-CGC--UCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 3874 0.67 0.73157
Target:  5'- cGGCGAgcacGGCGcGcAGcucgGCGAGCGCGg- -3'
miRNA:   3'- cCCGCUa---CCGU-C-UCa---CGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 5559 0.67 0.712002
Target:  5'- gGGGCGcccgagcGGCGGAGaUGgGGGCGCc-- -3'
miRNA:   3'- -CCCGCua-----CCGUCUC-ACgCUCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 7189 0.72 0.420511
Target:  5'- gGGGgGAgGGgGGGGUGCGcGUGCGUg -3'
miRNA:   3'- -CCCgCUaCCgUCUCACGCuCGCGCAg -5'
23657 3' -58.9 NC_005261.1 + 7994 0.66 0.769628
Target:  5'- uGGGagaGggGGgAGAGgggggcuugaGCGAGCGgGUCu -3'
miRNA:   3'- -CCCg--CuaCCgUCUCa---------CGCUCGCgCAG- -5'
23657 3' -58.9 NC_005261.1 + 9628 0.66 0.741233
Target:  5'- aGGCGggGGUGGGGgcuggGUGGGCGgGg- -3'
miRNA:   3'- cCCGCuaCCGUCUCa----CGCUCGCgCag -5'
23657 3' -58.9 NC_005261.1 + 11441 0.67 0.693164
Target:  5'- gGGGCGgcGGaAGAGggaaaaagaagcggaGCGGGCGCGg- -3'
miRNA:   3'- -CCCGCuaCCgUCUCa--------------CGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 11828 0.69 0.601452
Target:  5'- -aGUGggGGCGGGGgccccGCGGGCGCG-Cg -3'
miRNA:   3'- ccCGCuaCCGUCUCa----CGCUCGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 12772 0.82 0.11042
Target:  5'- cGGCGGUGGCGGGGggcucgucgGCGAGCuCGUCg -3'
miRNA:   3'- cCCGCUACCGUCUCa--------CGCUCGcGCAG- -5'
23657 3' -58.9 NC_005261.1 + 13115 0.66 0.778865
Target:  5'- gGGGCGucGGCGGcc-GCGGGgCGCGUg -3'
miRNA:   3'- -CCCGCuaCCGUCucaCGCUC-GCGCAg -5'
23657 3' -58.9 NC_005261.1 + 13672 0.67 0.73157
Target:  5'- cGGGgGggGcGCGGGGcgcGCGGGCGUGg- -3'
miRNA:   3'- -CCCgCuaC-CGUCUCa--CGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 13704 0.68 0.65198
Target:  5'- gGGGCGGgcugggGGCGGGG-GUGGGgGUGg- -3'
miRNA:   3'- -CCCGCUa-----CCGUCUCaCGCUCgCGCag -5'
23657 3' -58.9 NC_005261.1 + 14028 0.69 0.591383
Target:  5'- -uGCGAUGGCcagcGGGGccaUGCGAGCG-GUCc -3'
miRNA:   3'- ccCGCUACCG----UCUC---ACGCUCGCgCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.