miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23657 3' -58.9 NC_005261.1 + 43467 0.81 0.119324
Target:  5'- cGGGCGGgugcUGGCGGAGUGCGAGgccuuCGCGg- -3'
miRNA:   3'- -CCCGCU----ACCGUCUCACGCUC-----GCGCag -5'
23657 3' -58.9 NC_005261.1 + 43793 0.66 0.750803
Target:  5'- aGGGCGccgcGGguGAGgggGCGccgGGCGCGcCc -3'
miRNA:   3'- -CCCGCua--CCguCUCa--CGC---UCGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 43845 0.69 0.601452
Target:  5'- cGGCGAgGGC-GAGgacGCGGcCGCGUCg -3'
miRNA:   3'- cCCGCUaCCGuCUCa--CGCUcGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 51006 0.67 0.702113
Target:  5'- uGGGCGc-GGCgGGAGcucgGCGAGCGCc-- -3'
miRNA:   3'- -CCCGCuaCCG-UCUCa---CGCUCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 56005 0.66 0.760271
Target:  5'- cGGCGggGGCGGGG-GCGGGgaagacgcaauCGCGcCc -3'
miRNA:   3'- cCCGCuaCCGUCUCaCGCUC-----------GCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 56142 0.66 0.741233
Target:  5'- gGGGCGcgGGCcGAGggugGCG-GCaGCGg- -3'
miRNA:   3'- -CCCGCuaCCGuCUCa---CGCuCG-CGCag -5'
23657 3' -58.9 NC_005261.1 + 56961 0.68 0.641874
Target:  5'- uGGcGCGGcuccGGCAGuGGUucggcaGCGAGCGCGUg -3'
miRNA:   3'- -CC-CGCUa---CCGUC-UCA------CGCUCGCGCAg -5'
23657 3' -58.9 NC_005261.1 + 57191 0.66 0.769628
Target:  5'- cGGCGGgaagGGgGGGGgggGCGcGCGgGUCc -3'
miRNA:   3'- cCCGCUa---CCgUCUCa--CGCuCGCgCAG- -5'
23657 3' -58.9 NC_005261.1 + 57846 0.66 0.787974
Target:  5'- cGGGCGcgGGCGGcaAGgccucgGCGcuCGgGUCg -3'
miRNA:   3'- -CCCGCuaCCGUC--UCa-----CGCucGCgCAG- -5'
23657 3' -58.9 NC_005261.1 + 58552 0.66 0.767765
Target:  5'- cGGGCuccugcgccgucGUGGCcgcGAGcgGCGAGCGCGa- -3'
miRNA:   3'- -CCCGc-----------UACCGu--CUCa-CGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 59443 0.67 0.692167
Target:  5'- aGGCGccGGCAGcAGcGCGGccGCGgCGUCg -3'
miRNA:   3'- cCCGCuaCCGUC-UCaCGCU--CGC-GCAG- -5'
23657 3' -58.9 NC_005261.1 + 63355 0.72 0.403345
Target:  5'- cGGGUucacGGUGGCGcGGUGCGGGUGUGcCg -3'
miRNA:   3'- -CCCG----CUACCGUcUCACGCUCGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 67086 0.69 0.611542
Target:  5'- cGGGCGGuccaUGGCGcGAcgcgGUGCGGGCgGCG-Cg -3'
miRNA:   3'- -CCCGCU----ACCGU-CU----CACGCUCG-CGCaG- -5'
23657 3' -58.9 NC_005261.1 + 67672 0.68 0.65198
Target:  5'- cGGCGccaGGCGcg--GUGAGCGCGUCa -3'
miRNA:   3'- cCCGCua-CCGUcucaCGCUCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 68339 0.66 0.787974
Target:  5'- cGGCGAccccuaccUGGCcGAGUGCuu-CGUGUCg -3'
miRNA:   3'- cCCGCU--------ACCGuCUCACGcucGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 69744 0.72 0.438111
Target:  5'- aGGCGGaGGaGGAG-GCGAGCGCGg- -3'
miRNA:   3'- cCCGCUaCCgUCUCaCGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 71970 0.66 0.787974
Target:  5'- gGGGCGcggagcgcgcGGCAG-GUGCGca-GCGUCg -3'
miRNA:   3'- -CCCGCua--------CCGUCuCACGCucgCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 72461 0.73 0.362427
Target:  5'- cGGCGAgcgcGGC-GAGcGCGAGCGCGg- -3'
miRNA:   3'- cCCGCUa---CCGuCUCaCGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 72592 0.68 0.641874
Target:  5'- aGGGCGAUcGGCGcgcaaauguaccGGGcggGCGGGCGCa-- -3'
miRNA:   3'- -CCCGCUA-CCGU------------CUCa--CGCUCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 73225 0.69 0.581344
Target:  5'- gGGcGCGGUGGCcgcGAGcGCGAGCagguccuccGCGUUg -3'
miRNA:   3'- -CC-CGCUACCGu--CUCaCGCUCG---------CGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.