miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23657 3' -58.9 NC_005261.1 + 138203 0.69 0.611542
Target:  5'- cGGGCGGggGGCAGGGcggacgGCGGcucggccgccGCGCGg- -3'
miRNA:   3'- -CCCGCUa-CCGUCUCa-----CGCU----------CGCGCag -5'
23657 3' -58.9 NC_005261.1 + 138041 0.68 0.621647
Target:  5'- cGGCGGUGGCGGcGGUgGCG-GCgGCGg- -3'
miRNA:   3'- cCCGCUACCGUC-UCA-CGCuCG-CGCag -5'
23657 3' -58.9 NC_005261.1 + 137761 0.76 0.234286
Target:  5'- -cGCGggGGCGGGGUGCGGgGCGCGcCc -3'
miRNA:   3'- ccCGCuaCCGUCUCACGCU-CGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 136564 0.67 0.692167
Target:  5'- gGGGCaGAaGGCGcGGGUggGCGGGCGCa-- -3'
miRNA:   3'- -CCCG-CUaCCGU-CUCA--CGCUCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 135210 0.73 0.378444
Target:  5'- aGGCGGc-GCAGAGggccacgGcCGAGCGCGUCg -3'
miRNA:   3'- cCCGCUacCGUCUCa------C-GCUCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 135086 0.68 0.66207
Target:  5'- cGGGCucgcggcccGgcGGCGGAGcGCGAGgcggacccCGCGUCu -3'
miRNA:   3'- -CCCG---------CuaCCGUCUCaCGCUC--------GCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 134901 0.67 0.702113
Target:  5'- cGGUGGUGGagcGGGUGCGcaAGCGCa-- -3'
miRNA:   3'- cCCGCUACCgu-CUCACGC--UCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 134586 0.66 0.764027
Target:  5'- aGGGCGGgccUGGCgagcauaaagcgccgGGucuGGUGCGAacGCGgCGUCg -3'
miRNA:   3'- -CCCGCU---ACCG---------------UC---UCACGCU--CGC-GCAG- -5'
23657 3' -58.9 NC_005261.1 + 132624 0.76 0.263824
Target:  5'- gGGGCGcUGGCGccGAGgacGCGGGCGCGg- -3'
miRNA:   3'- -CCCGCuACCGU--CUCa--CGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 129658 0.73 0.354597
Target:  5'- cGGCGgcGGCAGGG-GCGGGaccggggGCGUCg -3'
miRNA:   3'- cCCGCuaCCGUCUCaCGCUCg------CGCAG- -5'
23657 3' -58.9 NC_005261.1 + 128886 0.71 0.474531
Target:  5'- aGGCGggGGCcGGGUGgGAGgcggGCGUCg -3'
miRNA:   3'- cCCGCuaCCGuCUCACgCUCg---CGCAG- -5'
23657 3' -58.9 NC_005261.1 + 128101 0.66 0.769628
Target:  5'- cGGGCGAgcggcgcgGcGCGGGGUcggGcCGAGUGCGg- -3'
miRNA:   3'- -CCCGCUa-------C-CGUCUCA---C-GCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 128070 0.71 0.465281
Target:  5'- uGGCGGgcgGGCGGGcGaGCGAGCGgGUUa -3'
miRNA:   3'- cCCGCUa--CCGUCU-CaCGCUCGCgCAG- -5'
23657 3' -58.9 NC_005261.1 + 126956 0.68 0.672137
Target:  5'- cGGGCGcgggGGCGGcAGcGCGAaccGCGCGg- -3'
miRNA:   3'- -CCCGCua--CCGUC-UCaCGCU---CGCGCag -5'
23657 3' -58.9 NC_005261.1 + 123162 0.72 0.403345
Target:  5'- aGGGCGG-GGCGGGcGcGCGGGCGUGg- -3'
miRNA:   3'- -CCCGCUaCCGUCU-CaCGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 122461 0.66 0.754603
Target:  5'- aGGCcGUGGCAGcGUacgccaggaucuccuGCaAGCGCGUCu -3'
miRNA:   3'- cCCGcUACCGUCuCA---------------CGcUCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 121808 0.67 0.692167
Target:  5'- gGGGCGcGUGGCuGGGcucUGCGGGC-CGcCg -3'
miRNA:   3'- -CCCGC-UACCGuCUC---ACGCUCGcGCaG- -5'
23657 3' -58.9 NC_005261.1 + 121123 0.73 0.386629
Target:  5'- aGGGCGcggaGGCGcGGGcGCGAGCGCGa- -3'
miRNA:   3'- -CCCGCua--CCGU-CUCaCGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 118893 0.66 0.778865
Target:  5'- cGGGCGcgcugGUGGCcugcgucuGGGUccggcgccGCGGGCGCGg- -3'
miRNA:   3'- -CCCGC-----UACCGu-------CUCA--------CGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 118393 0.66 0.787974
Target:  5'- aGGCGcUGGCGGcc-GCGGGCGCc-- -3'
miRNA:   3'- cCCGCuACCGUCucaCGCUCGCGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.