miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23657 3' -58.9 NC_005261.1 + 116479 0.74 0.346887
Target:  5'- cGGCGcgGGCGG-G-GCGGGCGCG-Cg -3'
miRNA:   3'- cCCGCuaCCGUCuCaCGCUCGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 113907 0.78 0.174633
Target:  5'- gGGcGCGAUGGCcGAGgcaGCGGGCGCGg- -3'
miRNA:   3'- -CC-CGCUACCGuCUCa--CGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 111460 0.69 0.601452
Target:  5'- cGGGCGccGGC-GAGgccaaaagGCGGGCGgGUg -3'
miRNA:   3'- -CCCGCuaCCGuCUCa-------CGCUCGCgCAg -5'
23657 3' -58.9 NC_005261.1 + 110805 0.67 0.682172
Target:  5'- cGGGCGAggaGGCGGGG-GCGgacggGGcCGCGg- -3'
miRNA:   3'- -CCCGCUa--CCGUCUCaCGC-----UC-GCGCag -5'
23657 3' -58.9 NC_005261.1 + 107259 0.71 0.465281
Target:  5'- cGGGCGcgcgGGCAcGG-GCGGGCGCG-Ca -3'
miRNA:   3'- -CCCGCua--CCGUcUCaCGCUCGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 105290 0.66 0.750803
Target:  5'- cGGCGAgcccgGGCGc---GCGAGCGCGg- -3'
miRNA:   3'- cCCGCUa----CCGUcucaCGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 103866 0.69 0.581344
Target:  5'- cGGCGgcGGCGGGGcgGCGccgccgggcGGCGCGcCa -3'
miRNA:   3'- cCCGCuaCCGUCUCa-CGC---------UCGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 98924 0.66 0.778865
Target:  5'- gGGGuCGGcuGCGGGGgGC-AGCGCGUCc -3'
miRNA:   3'- -CCC-GCUacCGUCUCaCGcUCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 98591 0.67 0.724756
Target:  5'- cGGGCGAguaGGCGGcgcccgcaaaauccgGCGGGUauGCGUCg -3'
miRNA:   3'- -CCCGCUa--CCGUCuca------------CGCUCG--CGCAG- -5'
23657 3' -58.9 NC_005261.1 + 98382 0.69 0.561379
Target:  5'- cGGGCGcaauaccGGCGuGGGgGCGGGCGCGg- -3'
miRNA:   3'- -CCCGCua-----CCGU-CUCaCGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 98352 0.73 0.39493
Target:  5'- -cGCGggGGCGGGG-GUGGGCGCGg- -3'
miRNA:   3'- ccCGCuaCCGUCUCaCGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 98234 0.68 0.621647
Target:  5'- cGGGCaucGAUuuccgcGGCccGGUGCG-GCGCGUCa -3'
miRNA:   3'- -CCCG---CUA------CCGucUCACGCuCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 98195 0.67 0.712002
Target:  5'- gGGGCGc-GGCGGGcaGCGGGCGCc-- -3'
miRNA:   3'- -CCCGCuaCCGUCUcaCGCUCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 98057 0.67 0.702113
Target:  5'- cGGGCGgcGGgAccgcGGGcgGCGGGUGUGUCc -3'
miRNA:   3'- -CCCGCuaCCgU----CUCa-CGCUCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 97728 0.71 0.465281
Target:  5'- cGGGCGGgcuaacggcUGGCAGGGgcgggGCGGGCucgGCGg- -3'
miRNA:   3'- -CCCGCU---------ACCGUCUCa----CGCUCG---CGCag -5'
23657 3' -58.9 NC_005261.1 + 97617 0.76 0.257684
Target:  5'- cGGGCGGagcgGGCGGAGcgggcggaGCGGGCGCGg- -3'
miRNA:   3'- -CCCGCUa---CCGUCUCa-------CGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 97585 0.69 0.581344
Target:  5'- uGGCGcgGGCGGAGcggGCGgAGCGgG-Cg -3'
miRNA:   3'- cCCGCuaCCGUCUCa--CGC-UCGCgCaG- -5'
23657 3' -58.9 NC_005261.1 + 96949 0.68 0.672137
Target:  5'- cGGGCGcAUcGGCGGGGcagccGcCGGGCGCGa- -3'
miRNA:   3'- -CCCGC-UA-CCGUCUCa----C-GCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 96870 0.73 0.39493
Target:  5'- gGGGCGcgGGUAGcGUGCGGauccGCGCcUCg -3'
miRNA:   3'- -CCCGCuaCCGUCuCACGCU----CGCGcAG- -5'
23657 3' -58.9 NC_005261.1 + 95672 0.67 0.702113
Target:  5'- cGGGCGcgGGUGuGAgcacGUGCacGAGCGCGa- -3'
miRNA:   3'- -CCCGCuaCCGU-CU----CACG--CUCGCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.