miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23657 3' -58.9 NC_005261.1 + 93683 0.69 0.571341
Target:  5'- cGGCGccGGCGGGGcgccgGCGGGUGCcUCu -3'
miRNA:   3'- cCCGCuaCCGUCUCa----CGCUCGCGcAG- -5'
23657 3' -58.9 NC_005261.1 + 93568 0.66 0.778865
Target:  5'- cGGCGGUgcGGCGGGacGCGAucGCGCGcUCg -3'
miRNA:   3'- cCCGCUA--CCGUCUcaCGCU--CGCGC-AG- -5'
23657 3' -58.9 NC_005261.1 + 93444 0.66 0.782524
Target:  5'- aGGGCcGUGGcCAGcaccggccccagcgcGGUGcCGGggcGCGCGUCg -3'
miRNA:   3'- -CCCGcUACC-GUC---------------UCAC-GCU---CGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 92731 0.68 0.63176
Target:  5'- gGGaGCGG-GGCGGGGacaGCGAGCGCc-- -3'
miRNA:   3'- -CC-CGCUaCCGUCUCa--CGCUCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 86688 0.66 0.778865
Target:  5'- cGGCGA-GGCGGcccacGUacGCGcccAGCGCGUCc -3'
miRNA:   3'- cCCGCUaCCGUCu----CA--CGC---UCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 84955 0.66 0.769628
Target:  5'- cGGCGGccGCcGAGgcguCGGGCGCGUCc -3'
miRNA:   3'- cCCGCUacCGuCUCac--GCUCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 84108 0.68 0.641874
Target:  5'- gGGGCGGgaugGGgAGGGgggcaGCGGGCgGgGUCg -3'
miRNA:   3'- -CCCGCUa---CCgUCUCa----CGCUCG-CgCAG- -5'
23657 3' -58.9 NC_005261.1 + 82955 0.68 0.621647
Target:  5'- cGGCGccgGGCGGAagacGUG-GuGCGCGUCg -3'
miRNA:   3'- cCCGCua-CCGUCU----CACgCuCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 80066 0.68 0.66207
Target:  5'- cGGGCGcgGGgGGcGUGgGGGaCGCGg- -3'
miRNA:   3'- -CCCGCuaCCgUCuCACgCUC-GCGCag -5'
23657 3' -58.9 NC_005261.1 + 78462 0.7 0.531806
Target:  5'- aGGGgGAUGGUGGGG-GCGAGgGgGg- -3'
miRNA:   3'- -CCCgCUACCGUCUCaCGCUCgCgCag -5'
23657 3' -58.9 NC_005261.1 + 78421 0.68 0.63176
Target:  5'- uGGGCGAUGGgGGGG-GCGAuggggagaagGCGgGg- -3'
miRNA:   3'- -CCCGCUACCgUCUCaCGCU----------CGCgCag -5'
23657 3' -58.9 NC_005261.1 + 77172 0.66 0.788877
Target:  5'- aGGCGGgcaucGCAGGGcacacguaucugcagGCGAGCGCGg- -3'
miRNA:   3'- cCCGCUac---CGUCUCa--------------CGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 75477 0.68 0.65198
Target:  5'- cGGGCGgcGGCGcGGGccgcuaCGAGCGCGg- -3'
miRNA:   3'- -CCCGCuaCCGU-CUCac----GCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 75214 0.66 0.741233
Target:  5'- -cGCGGUGGCGGcgcugcAGUccaGCGGGCGCa-- -3'
miRNA:   3'- ccCGCUACCGUC------UCA---CGCUCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 74928 0.71 0.456125
Target:  5'- aGGGCGA-GGaCGGGGacugcggcGCGGGCGCGcUCg -3'
miRNA:   3'- -CCCGCUaCC-GUCUCa-------CGCUCGCGC-AG- -5'
23657 3' -58.9 NC_005261.1 + 74886 0.69 0.611542
Target:  5'- cGGCGgcGGCGGAGUcgGCGGcccgcgcuggccGCGCGg- -3'
miRNA:   3'- cCCGCuaCCGUCUCA--CGCU------------CGCGCag -5'
23657 3' -58.9 NC_005261.1 + 74856 0.66 0.778865
Target:  5'- cGGCGcgccgGGCGGAGgagGCGGaCGCGg- -3'
miRNA:   3'- cCCGCua---CCGUCUCa--CGCUcGCGCag -5'
23657 3' -58.9 NC_005261.1 + 74450 0.66 0.750803
Target:  5'- cGGCGggGGguGGGgGCGccgcccccGGCGCGg- -3'
miRNA:   3'- cCCGCuaCCguCUCaCGC--------UCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 74420 0.66 0.778865
Target:  5'- cGGGCGGgagGGCcGAGga-GAGCGCc-- -3'
miRNA:   3'- -CCCGCUa--CCGuCUCacgCUCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 74348 0.67 0.692167
Target:  5'- aGGcGCGgcGGCGGaAGggGCGGcCGCGUCc -3'
miRNA:   3'- -CC-CGCuaCCGUC-UCa-CGCUcGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.