miRNA display CGI


Results 81 - 100 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23657 3' -58.9 NC_005261.1 + 43793 0.66 0.750803
Target:  5'- aGGGCGccgcGGguGAGgggGCGccgGGCGCGcCc -3'
miRNA:   3'- -CCCGCua--CCguCUCa--CGC---UCGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 43467 0.81 0.119324
Target:  5'- cGGGCGGgugcUGGCGGAGUGCGAGgccuuCGCGg- -3'
miRNA:   3'- -CCCGCU----ACCGUCUCACGCUC-----GCGCag -5'
23657 3' -58.9 NC_005261.1 + 43191 0.69 0.611542
Target:  5'- cGGCGA-GGCAGAG-GUG-GUGCGg- -3'
miRNA:   3'- cCCGCUaCCGUCUCaCGCuCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 42842 1.11 0.000926
Target:  5'- uGGGCGAUGGCAGAGUGCGAGCGCGUCg -3'
miRNA:   3'- -CCCGCUACCGUCUCACGCUCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 38939 0.66 0.787974
Target:  5'- cGGCGGccgGGCGGGccGCGGcGCGCGg- -3'
miRNA:   3'- cCCGCUa--CCGUCUcaCGCU-CGCGCag -5'
23657 3' -58.9 NC_005261.1 + 34197 0.66 0.769628
Target:  5'- aGGGcCGGaGGCAGA---CG-GCGCGUCg -3'
miRNA:   3'- -CCC-GCUaCCGUCUcacGCuCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 32925 0.7 0.551466
Target:  5'- gGGGCGGcgGGCGGGGgGgGGGCGgGg- -3'
miRNA:   3'- -CCCGCUa-CCGUCUCaCgCUCGCgCag -5'
23657 3' -58.9 NC_005261.1 + 29962 0.7 0.551466
Target:  5'- aGGCGcuagaGGCGGcgcGGUGCGccgccGGCGCGUCc -3'
miRNA:   3'- cCCGCua---CCGUC---UCACGC-----UCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 27251 0.66 0.741233
Target:  5'- gGGGUGG-GGCGGGGUguGCGGGCaGCc-- -3'
miRNA:   3'- -CCCGCUaCCGUCUCA--CGCUCG-CGcag -5'
23657 3' -58.9 NC_005261.1 + 26875 0.7 0.531806
Target:  5'- gGGGCGGgggugGGUGGGGggggGCGGGgGCG-Ca -3'
miRNA:   3'- -CCCGCUa----CCGUCUCa---CGCUCgCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 24125 0.66 0.741233
Target:  5'- aGGCGggGGUGGGGgcuggGUGGGCGgGg- -3'
miRNA:   3'- cCCGCuaCCGUCUCa----CGCUCGCgCag -5'
23657 3' -58.9 NC_005261.1 + 24024 0.69 0.601452
Target:  5'- gGGGCGGaGcGCGGGGUuCGGGUggGCGUCc -3'
miRNA:   3'- -CCCGCUaC-CGUCUCAcGCUCG--CGCAG- -5'
23657 3' -58.9 NC_005261.1 + 23532 0.75 0.270083
Target:  5'- cGGGCGAgcGGCAGAGgcgGCagGAGC-CGUCg -3'
miRNA:   3'- -CCCGCUa-CCGUCUCa--CG--CUCGcGCAG- -5'
23657 3' -58.9 NC_005261.1 + 22744 0.66 0.787974
Target:  5'- cGGGCGcggGGCGGcG-GCGGcccaCGCGUCu -3'
miRNA:   3'- -CCCGCua-CCGUCuCaCGCUc---GCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 22577 0.67 0.712002
Target:  5'- aGGGgGAgagcGGCGGAG-GCG-GCGCa-- -3'
miRNA:   3'- -CCCgCUa---CCGUCUCaCGCuCGCGcag -5'
23657 3' -58.9 NC_005261.1 + 22100 0.78 0.197651
Target:  5'- gGGGCGGgagGGCGGuGUGCggaGAGUGCGUg -3'
miRNA:   3'- -CCCGCUa--CCGUCuCACG---CUCGCGCAg -5'
23657 3' -58.9 NC_005261.1 + 21818 0.67 0.721824
Target:  5'- cGGGCccgcGGCGGGcgcgcGUGCGGGCGgGcUCg -3'
miRNA:   3'- -CCCGcua-CCGUCU-----CACGCUCGCgC-AG- -5'
23657 3' -58.9 NC_005261.1 + 19493 0.67 0.702113
Target:  5'- uGGGCGAUccGGCgGGAGUGCaGGUacGCGa- -3'
miRNA:   3'- -CCCGCUA--CCG-UCUCACGcUCG--CGCag -5'
23657 3' -58.9 NC_005261.1 + 17462 0.67 0.702113
Target:  5'- gGGGaaacuGcgGGCAGAc-GCGGGCGCGcCg -3'
miRNA:   3'- -CCCg----CuaCCGUCUcaCGCUCGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 16409 0.66 0.767765
Target:  5'- cGGGCGGUgcGGgAGAGgcccccucgacgGCGGGCgGCGg- -3'
miRNA:   3'- -CCCGCUA--CCgUCUCa-----------CGCUCG-CGCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.