miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23657 3' -58.9 NC_005261.1 + 77172 0.66 0.788877
Target:  5'- aGGCGGgcaucGCAGGGcacacguaucugcagGCGAGCGCGg- -3'
miRNA:   3'- cCCGCUac---CGUCUCa--------------CGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 129658 0.73 0.354597
Target:  5'- cGGCGgcGGCAGGG-GCGGGaccggggGCGUCg -3'
miRNA:   3'- cCCGCuaCCGUCUCaCGCUCg------CGCAG- -5'
23657 3' -58.9 NC_005261.1 + 72461 0.73 0.362427
Target:  5'- cGGCGAgcgcGGC-GAGcGCGAGCGCGg- -3'
miRNA:   3'- cCCGCUa---CCGuCUCaCGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 135210 0.73 0.378444
Target:  5'- aGGCGGc-GCAGAGggccacgGcCGAGCGCGUCg -3'
miRNA:   3'- cCCGCUacCGUCUCa------C-GCUCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 121123 0.73 0.386629
Target:  5'- aGGGCGcggaGGCGcGGGcGCGAGCGCGa- -3'
miRNA:   3'- -CCCGCua--CCGU-CUCaCGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 96870 0.73 0.39493
Target:  5'- gGGGCGcgGGUAGcGUGCGGauccGCGCcUCg -3'
miRNA:   3'- -CCCGCuaCCGUCuCACGCU----CGCGcAG- -5'
23657 3' -58.9 NC_005261.1 + 98352 0.73 0.39493
Target:  5'- -cGCGggGGCGGGG-GUGGGCGCGg- -3'
miRNA:   3'- ccCGCuaCCGUCUCaCGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 123162 0.72 0.403345
Target:  5'- aGGGCGG-GGCGGGcGcGCGGGCGUGg- -3'
miRNA:   3'- -CCCGCUaCCGUCU-CaCGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 63355 0.72 0.403345
Target:  5'- cGGGUucacGGUGGCGcGGUGCGGGUGUGcCg -3'
miRNA:   3'- -CCCG----CUACCGUcUCACGCUCGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 116479 0.74 0.346887
Target:  5'- cGGCGcgGGCGG-G-GCGGGCGCG-Cg -3'
miRNA:   3'- cCCGCuaCCGUCuCaCGCUCGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 16181 0.75 0.303174
Target:  5'- cGGGCG-UGGCGGGGguggGCGGGggcCGCGUg -3'
miRNA:   3'- -CCCGCuACCGUCUCa---CGCUC---GCGCAg -5'
23657 3' -58.9 NC_005261.1 + 23532 0.75 0.270083
Target:  5'- cGGGCGAgcGGCAGAGgcgGCagGAGC-CGUCg -3'
miRNA:   3'- -CCCGCUa-CCGUCUCa--CG--CUCGcGCAG- -5'
23657 3' -58.9 NC_005261.1 + 12772 0.82 0.11042
Target:  5'- cGGCGGUGGCGGGGggcucgucgGCGAGCuCGUCg -3'
miRNA:   3'- cCCGCUACCGUCUCa--------CGCUCGcGCAG- -5'
23657 3' -58.9 NC_005261.1 + 43467 0.81 0.119324
Target:  5'- cGGGCGGgugcUGGCGGAGUGCGAGgccuuCGCGg- -3'
miRNA:   3'- -CCCGCU----ACCGUCUCACGCUC-----GCGCag -5'
23657 3' -58.9 NC_005261.1 + 113907 0.78 0.174633
Target:  5'- gGGcGCGAUGGCcGAGgcaGCGGGCGCGg- -3'
miRNA:   3'- -CC-CGCUACCGuCUCa--CGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 22100 0.78 0.197651
Target:  5'- gGGGCGGgagGGCGGuGUGCggaGAGUGCGUg -3'
miRNA:   3'- -CCCGCUa--CCGUCuCACG---CUCGCGCAg -5'
23657 3' -58.9 NC_005261.1 + 78 0.76 0.234286
Target:  5'- -cGCGggGGCGGGGUGCGGgGCGCGcCc -3'
miRNA:   3'- ccCGCuaCCGUCUCACGCU-CGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 137761 0.76 0.234286
Target:  5'- -cGCGggGGCGGGGUGCGGgGCGCGcCc -3'
miRNA:   3'- ccCGCuaCCGUCUCACGCU-CGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 97617 0.76 0.257684
Target:  5'- cGGGCGGagcgGGCGGAGcgggcggaGCGGGCGCGg- -3'
miRNA:   3'- -CCCGCUa---CCGUCUCa-------CGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 132624 0.76 0.263824
Target:  5'- gGGGCGcUGGCGccGAGgacGCGGGCGCGg- -3'
miRNA:   3'- -CCCGCuACCGU--CUCa--CGCUCGCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.