miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23657 3' -58.9 NC_005261.1 + 78 0.76 0.234286
Target:  5'- -cGCGggGGCGGGGUGCGGgGCGCGcCc -3'
miRNA:   3'- ccCGCuaCCGUCUCACGCU-CGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 22100 0.78 0.197651
Target:  5'- gGGGCGGgagGGCGGuGUGCggaGAGUGCGUg -3'
miRNA:   3'- -CCCGCUa--CCGUCuCACG---CUCGCGCAg -5'
23657 3' -58.9 NC_005261.1 + 113907 0.78 0.174633
Target:  5'- gGGcGCGAUGGCcGAGgcaGCGGGCGCGg- -3'
miRNA:   3'- -CC-CGCUACCGuCUCa--CGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 43467 0.81 0.119324
Target:  5'- cGGGCGGgugcUGGCGGAGUGCGAGgccuuCGCGg- -3'
miRNA:   3'- -CCCGCU----ACCGUCUCACGCUC-----GCGCag -5'
23657 3' -58.9 NC_005261.1 + 12772 0.82 0.11042
Target:  5'- cGGCGGUGGCGGGGggcucgucgGCGAGCuCGUCg -3'
miRNA:   3'- cCCGCUACCGUCUCa--------CGCUCGcGCAG- -5'
23657 3' -58.9 NC_005261.1 + 135210 0.73 0.378444
Target:  5'- aGGCGGc-GCAGAGggccacgGcCGAGCGCGUCg -3'
miRNA:   3'- cCCGCUacCGUCUCa------C-GCUCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 121123 0.73 0.386629
Target:  5'- aGGGCGcggaGGCGcGGGcGCGAGCGCGa- -3'
miRNA:   3'- -CCCGCua--CCGU-CUCaCGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 128886 0.71 0.474531
Target:  5'- aGGCGggGGCcGGGUGgGAGgcggGCGUCg -3'
miRNA:   3'- cCCGCuaCCGuCUCACgCUCg---CGCAG- -5'
23657 3' -58.9 NC_005261.1 + 128070 0.71 0.465281
Target:  5'- uGGCGGgcgGGCGGGcGaGCGAGCGgGUUa -3'
miRNA:   3'- cCCGCUa--CCGUCU-CaCGCUCGCgCAG- -5'
23657 3' -58.9 NC_005261.1 + 107259 0.71 0.465281
Target:  5'- cGGGCGcgcgGGCAcGG-GCGGGCGCG-Ca -3'
miRNA:   3'- -CCCGCua--CCGUcUCaCGCUCGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 97728 0.71 0.465281
Target:  5'- cGGGCGGgcuaacggcUGGCAGGGgcgggGCGGGCucgGCGg- -3'
miRNA:   3'- -CCCGCU---------ACCGUCUCa----CGCUCG---CGCag -5'
23657 3' -58.9 NC_005261.1 + 74928 0.71 0.456125
Target:  5'- aGGGCGA-GGaCGGGGacugcggcGCGGGCGCGcUCg -3'
miRNA:   3'- -CCCGCUaCC-GUCUCa-------CGCUCGCGC-AG- -5'
23657 3' -58.9 NC_005261.1 + 73593 0.71 0.447068
Target:  5'- cGGCGGaGGCGGcGgccGCGAGCGCG-Cg -3'
miRNA:   3'- cCCGCUaCCGUCuCa--CGCUCGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 1006 0.71 0.447068
Target:  5'- gGGGCGGggGGCGGGGgGCGGGUGgGc- -3'
miRNA:   3'- -CCCGCUa-CCGUCUCaCGCUCGCgCag -5'
23657 3' -58.9 NC_005261.1 + 69744 0.72 0.438111
Target:  5'- aGGCGGaGGaGGAG-GCGAGCGCGg- -3'
miRNA:   3'- cCCGCUaCCgUCUCaCGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 7189 0.72 0.420511
Target:  5'- gGGGgGAgGGgGGGGUGCGcGUGCGUg -3'
miRNA:   3'- -CCCgCUaCCgUCUCACGCuCGCGCAg -5'
23657 3' -58.9 NC_005261.1 + 63355 0.72 0.403345
Target:  5'- cGGGUucacGGUGGCGcGGUGCGGGUGUGcCg -3'
miRNA:   3'- -CCCG----CUACCGUcUCACGCUCGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 123162 0.72 0.403345
Target:  5'- aGGGCGG-GGCGGGcGcGCGGGCGUGg- -3'
miRNA:   3'- -CCCGCUaCCGUCU-CaCGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 98352 0.73 0.39493
Target:  5'- -cGCGggGGCGGGG-GUGGGCGCGg- -3'
miRNA:   3'- ccCGCuaCCGUCUCaCGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 96870 0.73 0.39493
Target:  5'- gGGGCGcgGGUAGcGUGCGGauccGCGCcUCg -3'
miRNA:   3'- -CCCGCuaCCGUCuCACGCU----CGCGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.