miRNA display CGI


Results 61 - 80 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23657 3' -58.9 NC_005261.1 + 63355 0.72 0.403345
Target:  5'- cGGGUucacGGUGGCGcGGUGCGGGUGUGcCg -3'
miRNA:   3'- -CCCG----CUACCGUcUCACGCUCGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 7189 0.72 0.420511
Target:  5'- gGGGgGAgGGgGGGGUGCGcGUGCGUg -3'
miRNA:   3'- -CCCgCUaCCgUCUCACGCuCGCGCAg -5'
23657 3' -58.9 NC_005261.1 + 32925 0.7 0.551466
Target:  5'- gGGGCGGcgGGCGGGGgGgGGGCGgGg- -3'
miRNA:   3'- -CCCGCUa-CCGUCUCaCgCUCGCgCag -5'
23657 3' -58.9 NC_005261.1 + 29962 0.7 0.551466
Target:  5'- aGGCGcuagaGGCGGcgcGGUGCGccgccGGCGCGUCc -3'
miRNA:   3'- cCCGCua---CCGUC---UCACGC-----UCGCGCAG- -5'
23657 3' -58.9 NC_005261.1 + 98382 0.69 0.561379
Target:  5'- cGGGCGcaauaccGGCGuGGGgGCGGGCGCGg- -3'
miRNA:   3'- -CCCGCua-----CCGU-CUCaCGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 93683 0.69 0.571341
Target:  5'- cGGCGccGGCGGGGcgccgGCGGGUGCcUCu -3'
miRNA:   3'- cCCGCuaCCGUCUCa----CGCUCGCGcAG- -5'
23657 3' -58.9 NC_005261.1 + 73225 0.69 0.581344
Target:  5'- gGGcGCGGUGGCcgcGAGcGCGAGCagguccuccGCGUUg -3'
miRNA:   3'- -CC-CGCUACCGu--CUCaCGCUCG---------CGCAG- -5'
23657 3' -58.9 NC_005261.1 + 97585 0.69 0.581344
Target:  5'- uGGCGcgGGCGGAGcggGCGgAGCGgG-Cg -3'
miRNA:   3'- cCCGCuaCCGUCUCa--CGC-UCGCgCaG- -5'
23657 3' -58.9 NC_005261.1 + 103866 0.69 0.581344
Target:  5'- cGGCGgcGGCGGGGcgGCGccgccgggcGGCGCGcCa -3'
miRNA:   3'- cCCGCuaCCGUCUCa-CGC---------UCGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 14028 0.69 0.591383
Target:  5'- -uGCGAUGGCcagcGGGGccaUGCGAGCG-GUCc -3'
miRNA:   3'- ccCGCUACCG----UCUC---ACGCUCGCgCAG- -5'
23657 3' -58.9 NC_005261.1 + 26875 0.7 0.531806
Target:  5'- gGGGCGGgggugGGUGGGGggggGCGGGgGCG-Ca -3'
miRNA:   3'- -CCCGCUa----CCGUCUCa---CGCUCgCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 78462 0.7 0.531806
Target:  5'- aGGGgGAUGGUGGGG-GCGAGgGgGg- -3'
miRNA:   3'- -CCCgCUACCGUCUCaCGCUCgCgCag -5'
23657 3' -58.9 NC_005261.1 + 69744 0.72 0.438111
Target:  5'- aGGCGGaGGaGGAG-GCGAGCGCGg- -3'
miRNA:   3'- cCCGCUaCCgUCUCaCGCUCGCGCag -5'
23657 3' -58.9 NC_005261.1 + 1006 0.71 0.447068
Target:  5'- gGGGCGGggGGCGGGGgGCGGGUGgGc- -3'
miRNA:   3'- -CCCGCUa-CCGUCUCaCGCUCGCgCag -5'
23657 3' -58.9 NC_005261.1 + 73593 0.71 0.447068
Target:  5'- cGGCGGaGGCGGcGgccGCGAGCGCG-Cg -3'
miRNA:   3'- cCCGCUaCCGUCuCa--CGCUCGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 74928 0.71 0.456125
Target:  5'- aGGGCGA-GGaCGGGGacugcggcGCGGGCGCGcUCg -3'
miRNA:   3'- -CCCGCUaCC-GUCUCa-------CGCUCGCGC-AG- -5'
23657 3' -58.9 NC_005261.1 + 97728 0.71 0.465281
Target:  5'- cGGGCGGgcuaacggcUGGCAGGGgcgggGCGGGCucgGCGg- -3'
miRNA:   3'- -CCCGCU---------ACCGUCUCa----CGCUCG---CGCag -5'
23657 3' -58.9 NC_005261.1 + 107259 0.71 0.465281
Target:  5'- cGGGCGcgcgGGCAcGG-GCGGGCGCG-Ca -3'
miRNA:   3'- -CCCGCua--CCGUcUCaCGCUCGCGCaG- -5'
23657 3' -58.9 NC_005261.1 + 128070 0.71 0.465281
Target:  5'- uGGCGGgcgGGCGGGcGaGCGAGCGgGUUa -3'
miRNA:   3'- cCCGCUa--CCGUCU-CaCGCUCGCgCAG- -5'
23657 3' -58.9 NC_005261.1 + 128886 0.71 0.474531
Target:  5'- aGGCGggGGCcGGGUGgGAGgcggGCGUCg -3'
miRNA:   3'- cCCGCuaCCGuCUCACgCUCg---CGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.