miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23657 5' -55.6 NC_005261.1 + 76053 0.66 0.897898
Target:  5'- -cAGCgUGGCCGGCg-GGCGCcaccagGGCg -3'
miRNA:   3'- auUUGaACCGGCCGagCCGUGca----CUG- -5'
23657 5' -55.6 NC_005261.1 + 89089 0.66 0.897898
Target:  5'- -cGGCUgcGGCCcgGGCgcgcuggCGcGCGCGUGGCa -3'
miRNA:   3'- auUUGAa-CCGG--CCGa------GC-CGUGCACUG- -5'
23657 5' -55.6 NC_005261.1 + 85117 0.66 0.89115
Target:  5'- aAAACUgcGCCaGCUCGGCcacguugcccgGCGUGAg -3'
miRNA:   3'- aUUUGAacCGGcCGAGCCG-----------UGCACUg -5'
23657 5' -55.6 NC_005261.1 + 23724 0.66 0.89115
Target:  5'- cAAGCgggUGGCCGcGCcgaGGCGCGUccgggaggGGCg -3'
miRNA:   3'- aUUUGa--ACCGGC-CGag-CCGUGCA--------CUG- -5'
23657 5' -55.6 NC_005261.1 + 106104 0.66 0.89115
Target:  5'- -cGACgucGGCCGGCgucgcCGGCGCGcGcGCg -3'
miRNA:   3'- auUUGaa-CCGGCCGa----GCCGUGCaC-UG- -5'
23657 5' -55.6 NC_005261.1 + 14437 0.66 0.89115
Target:  5'- gGAACUcGGCUcGCUCgcggGGCGCGcGGCg -3'
miRNA:   3'- aUUUGAaCCGGcCGAG----CCGUGCaCUG- -5'
23657 5' -55.6 NC_005261.1 + 68120 0.66 0.890462
Target:  5'- gGAGCUgcgcgGGCCgcGGCgCGGCGaccgcgcCGUGGCc -3'
miRNA:   3'- aUUUGAa----CCGG--CCGaGCCGU-------GCACUG- -5'
23657 5' -55.6 NC_005261.1 + 32480 0.66 0.884165
Target:  5'- cGGGCUUcccggGGCCGGCgacggCGGCAUc-GGCg -3'
miRNA:   3'- aUUUGAA-----CCGGCCGa----GCCGUGcaCUG- -5'
23657 5' -55.6 NC_005261.1 + 127614 0.66 0.884165
Target:  5'- cUGAACgcuagcGGCCGGC-CGGaCGCGacGGCg -3'
miRNA:   3'- -AUUUGaa----CCGGCCGaGCC-GUGCa-CUG- -5'
23657 5' -55.6 NC_005261.1 + 36797 0.66 0.884165
Target:  5'- gAGACuUUGcGCCGGC-CGGCgcuACGUGcCc -3'
miRNA:   3'- aUUUG-AAC-CGGCCGaGCCG---UGCACuG- -5'
23657 5' -55.6 NC_005261.1 + 97240 0.66 0.884165
Target:  5'- -cGGCccGGCCGGCUgGGuCGCGgggucgggUGGCg -3'
miRNA:   3'- auUUGaaCCGGCCGAgCC-GUGC--------ACUG- -5'
23657 5' -55.6 NC_005261.1 + 113530 0.66 0.884165
Target:  5'- gAGGCca-GCCGGCUCGGgGcCGUGcGCg -3'
miRNA:   3'- aUUUGaacCGGCCGAGCCgU-GCAC-UG- -5'
23657 5' -55.6 NC_005261.1 + 5527 0.66 0.884165
Target:  5'- gAGGCc--GCCGGCuUCGGCGCGcagcgaGACg -3'
miRNA:   3'- aUUUGaacCGGCCG-AGCCGUGCa-----CUG- -5'
23657 5' -55.6 NC_005261.1 + 86480 0.66 0.884165
Target:  5'- aUGGACgcggccgGGCCGGCgccugucugCGGCAgG-GGCu -3'
miRNA:   3'- -AUUUGaa-----CCGGCCGa--------GCCGUgCaCUG- -5'
23657 5' -55.6 NC_005261.1 + 86885 0.66 0.876947
Target:  5'- ---cCUUGGCCGcgcccugguccGCgcgCGGCGCG-GACc -3'
miRNA:   3'- auuuGAACCGGC-----------CGa--GCCGUGCaCUG- -5'
23657 5' -55.6 NC_005261.1 + 45620 0.66 0.876947
Target:  5'- ------cGGCgCGGCgCGGCGCGgcgGGCc -3'
miRNA:   3'- auuugaaCCG-GCCGaGCCGUGCa--CUG- -5'
23657 5' -55.6 NC_005261.1 + 46890 0.66 0.876947
Target:  5'- cGAACUUGGCCagccaGGCcCGcGCACGcacgcggGGCu -3'
miRNA:   3'- aUUUGAACCGG-----CCGaGC-CGUGCa------CUG- -5'
23657 5' -55.6 NC_005261.1 + 63601 0.66 0.876947
Target:  5'- gGGGCccugUGGCCGGaugCGGCucccaGCGuUGACg -3'
miRNA:   3'- aUUUGa---ACCGGCCga-GCCG-----UGC-ACUG- -5'
23657 5' -55.6 NC_005261.1 + 99862 0.66 0.872506
Target:  5'- ------cGGCCGccgcgcgccgccgccGCUCGGCGCGagGGCg -3'
miRNA:   3'- auuugaaCCGGC---------------CGAGCCGUGCa-CUG- -5'
23657 5' -55.6 NC_005261.1 + 20714 0.66 0.868743
Target:  5'- cUGAACUcgGGCCgcgcuggGGCUCGGCcguuucACGUGu- -3'
miRNA:   3'- -AUUUGAa-CCGG-------CCGAGCCG------UGCACug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.