miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23658 3' -55.5 NC_005261.1 + 107908 0.66 0.913466
Target:  5'- cGGCCgCGGCCUCGgccaCGAguGCcgcgcgGAUCGCc -3'
miRNA:   3'- -UCGG-GCCGGAGCa---GCUacUG------UUAGUG- -5'
23658 3' -55.5 NC_005261.1 + 96092 0.71 0.671409
Target:  5'- cGGCCCGGCgcaaccugCUUGUCGG-GAC-GUCGCu -3'
miRNA:   3'- -UCGGGCCG--------GAGCAGCUaCUGuUAGUG- -5'
23658 3' -55.5 NC_005261.1 + 31256 0.7 0.691913
Target:  5'- cGCCCGGCgCUCGccuUCGAccccgaggcgcUGGCcgaGAUCGCg -3'
miRNA:   3'- uCGGGCCG-GAGC---AGCU-----------ACUG---UUAGUG- -5'
23658 3' -55.5 NC_005261.1 + 29330 0.7 0.702094
Target:  5'- cGCCCGGCCgcgugcgcuUCGgcggCGcgGGCGAcacUCGCg -3'
miRNA:   3'- uCGGGCCGG---------AGCa---GCuaCUGUU---AGUG- -5'
23658 3' -55.5 NC_005261.1 + 102453 0.7 0.702094
Target:  5'- cGCCCGGCCUCGgCGc--GCAggCGCc -3'
miRNA:   3'- uCGGGCCGGAGCaGCuacUGUuaGUG- -5'
23658 3' -55.5 NC_005261.1 + 116270 0.7 0.702094
Target:  5'- cGCCCGGCggCGUCguGAUGGCGucgugcuUCACc -3'
miRNA:   3'- uCGGGCCGgaGCAG--CUACUGUu------AGUG- -5'
23658 3' -55.5 NC_005261.1 + 14361 0.7 0.722265
Target:  5'- cAGCCgCGGCCggggCGgcgCGGUGGCccgcAUCGCc -3'
miRNA:   3'- -UCGG-GCCGGa---GCa--GCUACUGu---UAGUG- -5'
23658 3' -55.5 NC_005261.1 + 59455 0.7 0.732237
Target:  5'- cAGCgCGGCCgcggCGUCGGggGGCAG-CGCc -3'
miRNA:   3'- -UCGgGCCGGa---GCAGCUa-CUGUUaGUG- -5'
23658 3' -55.5 NC_005261.1 + 15318 0.69 0.761581
Target:  5'- gAGCCgGGCC-CGUCGAagccgUGcACAAaCGCg -3'
miRNA:   3'- -UCGGgCCGGaGCAGCU-----AC-UGUUaGUG- -5'
23658 3' -55.5 NC_005261.1 + 92781 0.71 0.671409
Target:  5'- gAGCCCGGgCUCGgggUCGggGucCGGUCGCc -3'
miRNA:   3'- -UCGGGCCgGAGC---AGCuaCu-GUUAGUG- -5'
23658 3' -55.5 NC_005261.1 + 59401 0.71 0.650773
Target:  5'- gAGCCCGGgCUCGcCGGcgccGGCGcuGUCGCg -3'
miRNA:   3'- -UCGGGCCgGAGCaGCUa---CUGU--UAGUG- -5'
23658 3' -55.5 NC_005261.1 + 555 0.71 0.650773
Target:  5'- cGGCUCGGCCgccgCG-CGGUGACAcuaCGCu -3'
miRNA:   3'- -UCGGGCCGGa---GCaGCUACUGUua-GUG- -5'
23658 3' -55.5 NC_005261.1 + 46389 0.76 0.38025
Target:  5'- cGGCgCCGGCCcCGUCGccGACGGUgGCg -3'
miRNA:   3'- -UCG-GGCCGGaGCAGCuaCUGUUAgUG- -5'
23658 3' -55.5 NC_005261.1 + 80339 0.76 0.38025
Target:  5'- cGGcCCCGGCCUCcUCGGUcacGCAGUCGCu -3'
miRNA:   3'- -UC-GGGCCGGAGcAGCUAc--UGUUAGUG- -5'
23658 3' -55.5 NC_005261.1 + 102344 0.75 0.441561
Target:  5'- cAGCUCGGCCgCGUCGAaGGCGGagCGCg -3'
miRNA:   3'- -UCGGGCCGGaGCAGCUaCUGUUa-GUG- -5'
23658 3' -55.5 NC_005261.1 + 101514 0.74 0.47901
Target:  5'- cAGCCCGGCgccCUCGUCGcgGuCGcgCGCc -3'
miRNA:   3'- -UCGGGCCG---GAGCAGCuaCuGUuaGUG- -5'
23658 3' -55.5 NC_005261.1 + 44010 0.73 0.527886
Target:  5'- cAGCCCGGCUUCGgcgCGGcgGGCGGcCGCc -3'
miRNA:   3'- -UCGGGCCGGAGCa--GCUa-CUGUUaGUG- -5'
23658 3' -55.5 NC_005261.1 + 130335 0.73 0.55809
Target:  5'- cGGCCCGGCCgCGcUCGggGACGcgCuGCg -3'
miRNA:   3'- -UCGGGCCGGaGC-AGCuaCUGUuaG-UG- -5'
23658 3' -55.5 NC_005261.1 + 6419 0.72 0.568271
Target:  5'- uGGCCCGGCCugcUCG-CGAgGGCGGUC-Cg -3'
miRNA:   3'- -UCGGGCCGG---AGCaGCUaCUGUUAGuG- -5'
23658 3' -55.5 NC_005261.1 + 130877 0.72 0.613519
Target:  5'- cGGCCUGGCCUCGcucuacauccaccaCGAgcacaaGACGGUCGCc -3'
miRNA:   3'- -UCGGGCCGGAGCa-------------GCUa-----CUGUUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.