miRNA display CGI


Results 21 - 40 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23658 3' -55.5 NC_005261.1 + 122710 0.67 0.850383
Target:  5'- cGCcgCCGGCCgcgcCGUCGAUGu---UCACg -3'
miRNA:   3'- uCG--GGCCGGa---GCAGCUACuguuAGUG- -5'
23658 3' -55.5 NC_005261.1 + 43378 0.67 0.850383
Target:  5'- cGGCaUCGGCCUCG-CGGUGcCGG-CACc -3'
miRNA:   3'- -UCG-GGCCGGAGCaGCUACuGUUaGUG- -5'
23658 3' -55.5 NC_005261.1 + 50541 0.67 0.842285
Target:  5'- uGCCCGaGCCcaUCGgcgCGcgGACcacGGUCACg -3'
miRNA:   3'- uCGGGC-CGG--AGCa--GCuaCUG---UUAGUG- -5'
23658 3' -55.5 NC_005261.1 + 114359 0.67 0.842285
Target:  5'- uGGCCgCGGCCgaGUCGGUGGcCGAgaagUACg -3'
miRNA:   3'- -UCGG-GCCGGagCAGCUACU-GUUa---GUG- -5'
23658 3' -55.5 NC_005261.1 + 94368 0.67 0.842285
Target:  5'- cAGCgCaCGGCCg-GUCGAUGGCcagCGCg -3'
miRNA:   3'- -UCG-G-GCCGGagCAGCUACUGuuaGUG- -5'
23658 3' -55.5 NC_005261.1 + 48324 0.68 0.833991
Target:  5'- gGGCCCGGgCUCGgg---GGCGcgCGCg -3'
miRNA:   3'- -UCGGGCCgGAGCagcuaCUGUuaGUG- -5'
23658 3' -55.5 NC_005261.1 + 83390 0.68 0.833991
Target:  5'- gAGCgCGGCCUCGgcCGA-GGCGAgcaggugCGCg -3'
miRNA:   3'- -UCGgGCCGGAGCa-GCUaCUGUUa------GUG- -5'
23658 3' -55.5 NC_005261.1 + 10022 0.68 0.833991
Target:  5'- cGGgCgGGCCUCGcgUCGggGGCGcUCGCu -3'
miRNA:   3'- -UCgGgCCGGAGC--AGCuaCUGUuAGUG- -5'
23658 3' -55.5 NC_005261.1 + 118037 0.68 0.82551
Target:  5'- gGGCCCGGCCgcgaCGcccgCGcUGGCGGcCGCg -3'
miRNA:   3'- -UCGGGCCGGa---GCa---GCuACUGUUaGUG- -5'
23658 3' -55.5 NC_005261.1 + 118872 0.68 0.816848
Target:  5'- cGGCCCuGGCCUCGgccacCGcgGGCg--CGCu -3'
miRNA:   3'- -UCGGG-CCGGAGCa----GCuaCUGuuaGUG- -5'
23658 3' -55.5 NC_005261.1 + 69403 0.68 0.816848
Target:  5'- gAGCCUGGCCUCccgacacacgCGccGGCGcAUCACg -3'
miRNA:   3'- -UCGGGCCGGAGca--------GCuaCUGU-UAGUG- -5'
23658 3' -55.5 NC_005261.1 + 31744 0.68 0.816848
Target:  5'- uGGCCCGGCC--GUCG--GGCAGgcgCACg -3'
miRNA:   3'- -UCGGGCCGGagCAGCuaCUGUUa--GUG- -5'
23658 3' -55.5 NC_005261.1 + 138226 0.68 0.808015
Target:  5'- cGGCUCGGCCgccgCG-CGGUGACAc---- -3'
miRNA:   3'- -UCGGGCCGGa---GCaGCUACUGUuagug -5'
23658 3' -55.5 NC_005261.1 + 113318 0.69 0.789868
Target:  5'- gGGCCCGGCUgCG-CGA-GAaGGUCGCg -3'
miRNA:   3'- -UCGGGCCGGaGCaGCUaCUgUUAGUG- -5'
23658 3' -55.5 NC_005261.1 + 90997 0.69 0.789868
Target:  5'- -cCUCGGCCUCGUCGccGGCGG-CAa -3'
miRNA:   3'- ucGGGCCGGAGCAGCuaCUGUUaGUg -5'
23658 3' -55.5 NC_005261.1 + 1094 0.69 0.780572
Target:  5'- gAGCCCGG-CUCGUCGuccGAgGA-CGCg -3'
miRNA:   3'- -UCGGGCCgGAGCAGCua-CUgUUaGUG- -5'
23658 3' -55.5 NC_005261.1 + 59485 0.69 0.780572
Target:  5'- cGGCgCGGCCgccgCGccagCGgcGGCGGUCGCa -3'
miRNA:   3'- -UCGgGCCGGa---GCa---GCuaCUGUUAGUG- -5'
23658 3' -55.5 NC_005261.1 + 122317 0.69 0.77114
Target:  5'- cGCCCgGGCCggcgGUCaGGUGGCGcUCGCa -3'
miRNA:   3'- uCGGG-CCGGag--CAG-CUACUGUuAGUG- -5'
23658 3' -55.5 NC_005261.1 + 15318 0.69 0.761581
Target:  5'- gAGCCgGGCC-CGUCGAagccgUGcACAAaCGCg -3'
miRNA:   3'- -UCGGgCCGGaGCAGCU-----AC-UGUUaGUG- -5'
23658 3' -55.5 NC_005261.1 + 59455 0.7 0.732237
Target:  5'- cAGCgCGGCCgcggCGUCGGggGGCAG-CGCc -3'
miRNA:   3'- -UCGgGCCGGa---GCAGCUa-CUGUUaGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.