miRNA display CGI


Results 21 - 40 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23658 5' -58.1 NC_005261.1 + 109472 0.66 0.846682
Target:  5'- cGCGCGugcGCGCCcG-AGCGcaaauGGCCG-GGg -3'
miRNA:   3'- -CGCGCu--UGCGGcCuUCGC-----UCGGCaCC- -5'
23658 5' -58.1 NC_005261.1 + 111673 0.66 0.846682
Target:  5'- cCGCGGugGCgGcGuacgucGGCGAuGUCGUGGa -3'
miRNA:   3'- cGCGCUugCGgC-Cu-----UCGCU-CGGCACC- -5'
23658 5' -58.1 NC_005261.1 + 138195 0.66 0.846682
Target:  5'- gGCGCGGGCggGCgGGggGCaGGGCgGa-- -3'
miRNA:   3'- -CGCGCUUG--CGgCCuuCG-CUCGgCacc -5'
23658 5' -58.1 NC_005261.1 + 12314 0.66 0.8459
Target:  5'- gGCGCGua-GCCGGcGGGCGcgcgcuuGGCCGgcgcGGc -3'
miRNA:   3'- -CGCGCuugCGGCC-UUCGC-------UCGGCa---CC- -5'
23658 5' -58.1 NC_005261.1 + 48318 0.66 0.841962
Target:  5'- cGCGuCGGGC-CCGGGcucgggggcgcgcgcGGCGAGgCCGaGGa -3'
miRNA:   3'- -CGC-GCUUGcGGCCU---------------UCGCUC-GGCaCC- -5'
23658 5' -58.1 NC_005261.1 + 69884 0.66 0.839577
Target:  5'- gGCGCGAGuguguguguuuUGCCGGggGCGucuuuauuggaaaccGCaggggGUGGg -3'
miRNA:   3'- -CGCGCUU-----------GCGGCCuuCGCu--------------CGg----CACC- -5'
23658 5' -58.1 NC_005261.1 + 86453 0.66 0.838778
Target:  5'- aGCGCGAacuccuggcccGCGCCguugauGGAcGCG-GCCG-GGc -3'
miRNA:   3'- -CGCGCU-----------UGCGG------CCUuCGCuCGGCaCC- -5'
23658 5' -58.1 NC_005261.1 + 29409 0.66 0.838778
Target:  5'- cGCGCGcuacgcGGCgGCCGcGggGCccgcGGCCGUGu -3'
miRNA:   3'- -CGCGC------UUG-CGGC-CuuCGc---UCGGCACc -5'
23658 5' -58.1 NC_005261.1 + 49304 0.66 0.838778
Target:  5'- gGCgGUGAGCGCCGcGcAGCccucGAGCCGg-- -3'
miRNA:   3'- -CG-CGCUUGCGGC-CuUCG----CUCGGCacc -5'
23658 5' -58.1 NC_005261.1 + 60846 0.66 0.838778
Target:  5'- gGCgGCGAggucgcGCGCCGGGccgAGCccgcGCCGUGu -3'
miRNA:   3'- -CG-CGCU------UGCGGCCU---UCGcu--CGGCACc -5'
23658 5' -58.1 NC_005261.1 + 62435 0.66 0.838778
Target:  5'- aGCGCGAGCcggucGCCGGGccccAGC-AGCgGcGGa -3'
miRNA:   3'- -CGCGCUUG-----CGGCCU----UCGcUCGgCaCC- -5'
23658 5' -58.1 NC_005261.1 + 53943 0.66 0.838778
Target:  5'- aGCGCGGcGCGCCGcGcucGCGGGUUcggGUGGc -3'
miRNA:   3'- -CGCGCU-UGCGGC-Cuu-CGCUCGG---CACC- -5'
23658 5' -58.1 NC_005261.1 + 49798 0.66 0.838778
Target:  5'- aGCGCGAGaCGUCGcccuccGCGGGgCgCGUGGa -3'
miRNA:   3'- -CGCGCUU-GCGGCcuu---CGCUC-G-GCACC- -5'
23658 5' -58.1 NC_005261.1 + 31454 0.66 0.838778
Target:  5'- gGCGaggaCGAGCGCCGGcggccuGAGUG-GCCGccGGu -3'
miRNA:   3'- -CGC----GCUUGCGGCC------UUCGCuCGGCa-CC- -5'
23658 5' -58.1 NC_005261.1 + 135302 0.66 0.838778
Target:  5'- cGCGCGAccggcguguCGCCcuGGGCG-GCCGUGc -3'
miRNA:   3'- -CGCGCUu--------GCGGccUUCGCuCGGCACc -5'
23658 5' -58.1 NC_005261.1 + 98162 0.66 0.837978
Target:  5'- cCGCGGGCGgCGGguGUguccuugGAGCCGccgGGg -3'
miRNA:   3'- cGCGCUUGCgGCCuuCG-------CUCGGCa--CC- -5'
23658 5' -58.1 NC_005261.1 + 5823 0.66 0.837978
Target:  5'- aGCgGCGGccgaugcGCGCCGGGuuacGGCG-GCCGagagagGGg -3'
miRNA:   3'- -CG-CGCU-------UGCGGCCU----UCGCuCGGCa-----CC- -5'
23658 5' -58.1 NC_005261.1 + 68062 0.66 0.833949
Target:  5'- aCGCGGGCacgguggucucggucGCCcgcGGggGCGgggaGGCCGUGa -3'
miRNA:   3'- cGCGCUUG---------------CGG---CCuuCGC----UCGGCACc -5'
23658 5' -58.1 NC_005261.1 + 49712 0.66 0.830695
Target:  5'- -gGCGAAcauCGCgUGGAAGU-AGCUGUGGu -3'
miRNA:   3'- cgCGCUU---GCG-GCCUUCGcUCGGCACC- -5'
23658 5' -58.1 NC_005261.1 + 66716 0.66 0.830695
Target:  5'- -aGCGAGCGCCGGuugauGCGcuucaccauguAGuuGUGc -3'
miRNA:   3'- cgCGCUUGCGGCCuu---CGC-----------UCggCACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.